C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204392 LSM2 9606 - 6:31797396-31806984 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375661 LSM2-001 31797396-31806984 protein_coding
  ENST00000470083 LSM2-004 31797396-31806817 processed_transcript
  ENST00000470086 LSM2-003 31797396-31806852 processed_transcript
  ENST00000475835 LSM2-007 31802880-31806602 processed_transcript
  ENST00000477182 LSM2-002 31797396-31806966 processed_transcript
  ENST00000491421 LSM2-006 31797396-31806659 processed_transcript
  ENST00000493387 LSM2-005 31797396-31806660 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375661ENST00000470083ENST00000477182ENST00000491421
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375661 15.504±0.00 11.215±0.00 N/A 4.836±4.57 7.059±4.48 8.022±6.05 4.614±4.25 16.423±0.00 3.294±1.19 14.809±0.00 14.878±0.00 27.594±19.12 35.985±7.55 23.489±3.85
ENST00000470083 N/A 11.966±0.00 1.599±0.00 2.648±0.84 3.899±0.00 7.752±0.00 2.864±0.00 5.850±1.17 4.477±0.00 12.691±0.00 N/A 12.239±1.96 6.594±0.00 9.067±0.00
ENST00000477182 N/A N/A 0.199±0.00 N/A N/A N/A N/A N/A 1.400±0.00 N/A 4.498±2.95 N/A N/A N/A
ENST00000491421 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.415±0.00 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006397 IEA mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017070 NAS U6 snRNA binding
GO:0019901 IEA protein kinase binding
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070867 smx5 smx5 protein_coding Danio_rerio
ENSMUSG00000007050 Lsm2 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Mus_musculus

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