C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375661 LSM2-001 ENSG00000204392 9606 - 6:31797396-31806984 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375661
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375661 15.504±0.00 11.215±0.00 4.836±4.57 7.059±4.48 8.022±6.05 4.614±4.25 16.423±0.00 3.294±1.19 14.809±0.00 14.878±0.00 27.594±19.12 35.985±7.55 23.489±3.85

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006397 IEA mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017070 NAS U6 snRNA binding
GO:0019901 IEA protein kinase binding
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114011 Lsm2-001 protein_coding Mus_musculus 0 499
ENSMUST00000007266 Lsm2-003 protein_coding Mus_musculus 0 446
ENSMUST00000174326 Lsm2-008 processed_transcript Mus_musculus 0 436
ENSMUST00000172777 Lsm2-004 processed_transcript Mus_musculus 0 435
ENSMUST00000172890 Lsm2-007 processed_transcript Mus_musculus 0 416
ENSMUST00000173004 Lsm2-011 protein_coding Mus_musculus 0 351
ENSMUST00000172666 Lsm2-010 retained_intron Mus_musculus 0 350
ENSMUST00000174860 Lsm2-005 retained_intron Mus_musculus 0 344
ENSMUST00000174241 Lsm2-009 processed_transcript Mus_musculus 0 339
ENSMUST00000174434 Lsm2-006 retained_intron Mus_musculus 0 248

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