C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000007050 Lsm2 10090 + 17:34981862-34985891 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000007266 Lsm2-003 34982129-34985891 protein_coding
  ENSMUST00000114011 Lsm2-001 34981880-34985891 protein_coding
  ENSMUST00000172523 Lsm2-002 34981862-34983981 retained_intron
  ENSMUST00000172666 Lsm2-010 34984608-34985890 retained_intron
  ENSMUST00000172777 Lsm2-004 34982159-34985834 processed_transcript
  ENSMUST00000172890 Lsm2-007 34982159-34985889 processed_transcript
  ENSMUST00000173004 Lsm2-011 34982159-34985889 protein_coding
  ENSMUST00000174241 Lsm2-009 34981911-34985671 processed_transcript
  ENSMUST00000174326 Lsm2-008 34982121-34985592 processed_transcript
  ENSMUST00000174434 Lsm2-006 34982209-34985497 retained_intron
  ENSMUST00000174860 Lsm2-005 34982169-34985497 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007266ENSMUST00000114011ENSMUST00000172523ENSMUST00000172666ENSMUST00000172777ENSMUST00000172890ENSMUST00000174241ENSMUST00000174326ENSMUST00000174860
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007266 N/A N/A N/A 0.592±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 77.848±30.62
ENSMUST00000114011 23.465±6.98 20.596±3.63 18.859±3.34 22.627±15.31 25.738±0.97 18.346±3.84 11.681±1.66 20.101±1.29 39.996±25.00 17.790±2.99 5.302±1.09 39.827±11.04 26.624±15.52 N/A
ENSMUST00000172523 N/A 38.562±8.48 N/A 0.292±0.00 6.589±0.05 N/A N/A N/A N/A N/A N/A 6.558±5.21 1.640±1.12 N/A
ENSMUST00000172666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.615±0.00 N/A N/A
ENSMUST00000172777 N/A N/A N/A N/A 4.954±0.00 N/A N/A N/A N/A N/A 1.917±0.00 N/A N/A 65.039±5.52
ENSMUST00000172890 N/A N/A N/A N/A 8.394±0.00 N/A N/A N/A N/A N/A N/A 14.896±0.02 13.345±6.38 N/A
ENSMUST00000174241 N/A N/A N/A N/A N/A 4.299±0.23 N/A N/A 4.771±0.00 N/A N/A N/A N/A N/A
ENSMUST00000174326 N/A N/A N/A 30.282±0.00 29.043±0.00 13.600±0.00 N/A N/A 88.621±0.00 N/A 3.107±0.57 N/A 31.886±11.64 N/A
ENSMUST00000174860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.420±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0019901 IDA protein kinase binding
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070867 smx5 smx5 protein_coding Danio_rerio
ENSG00000204392 LSM2 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Homo_sapiens

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