C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: valyl-tRNA synthetase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204394 VARS 9606 - 6:31777518-31795953 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375663 VARS-001 31777518-31795953 protein_coding
  ENST00000428445 VARS-006 31780455-31782589 protein_coding
  ENST00000440048 VARS-002 31792986-31795499 protein_coding
  ENST00000459667 VARS-012 31780878-31781750 retained_intron
  ENST00000461328 VARS-008 31782412-31784435 retained_intron
  ENST00000461874 VARS-009 31781358-31782420 retained_intron
  ENST00000463184 VARS-013 31779230-31780051 retained_intron
  ENST00000470953 VARS-014 31777518-31778182 processed_transcript
  ENST00000474643 VARS-005 31781693-31783239 retained_intron
  ENST00000479051 VARS-011 31780877-31781925 retained_intron
  ENST00000482996 VARS-010 31780551-31782194 processed_transcript
  ENST00000483275 VARS-007 31781700-31782429 processed_transcript
  ENST00000489979 VARS-004 31785246-31792278 retained_intron
  ENST00000495010 VARS-003 31784598-31792960 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375663ENST00000428445ENST00000489979ENST00000495010
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375663 22.794±0.00 17.297±0.00 11.119±0.00 6.731±4.86 5.788±3.76 4.206±3.32 8.766±7.07 7.899±6.57 9.586±0.00 32.453±32.13 17.183±11.80 18.208±1.47 50.428±9.76
ENST00000428445 N/A N/A 9.057±0.00 N/A N/A N/A 12.331±0.00 N/A N/A N/A N/A N/A 24.965±0.00
ENST00000489979 N/A N/A N/A N/A 2.746±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495010 N/A N/A N/A N/A 1.723±0.00 N/A 1.322±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002161 IEA aminoacyl-tRNA editing activity
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004832 IDA:IEA valine-tRNA ligase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0006418 TAS:IEA tRNA aminoacylation for protein translation
GO:0006438 IEA valyl-tRNA aminoacylation
GO:0006450 IEA regulation of translational fidelity
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044575 vars valyl-tRNA synthetase protein_coding Danio_rerio
ENSMUSG00000007029 Vars valyl-tRNA synthetase protein_coding Mus_musculus

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