C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valyl-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375663 VARS-001 ENSG00000204394 9606 - 6:31777518-31795953 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375663
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375663 22.794±0.00 17.297±0.00 11.119±0.00 6.731±4.86 5.788±3.76 4.206±3.32 8.766±7.07 7.899±6.57 9.586±0.00 32.453±32.13 17.183±11.80 18.208±1.47 50.428±9.76

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002161 IEA aminoacyl-tRNA editing activity
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004832 IDA:IEA valine-tRNA ligase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0006418 TAS:IEA tRNA aminoacylation for protein translation
GO:0006438 IEA valyl-tRNA aminoacylation
GO:0006450 IEA regulation of translational fidelity
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087315 Vars-002 protein_coding Mus_musculus 0 4488
ENSMUST00000173584 Vars-001 protein_coding Mus_musculus 0 4357
ENSMUST00000172637 Vars-003 retained_intron Mus_musculus 0 2486
ENSMUST00000118387 Gm14780-001 processed_pseudogene Mus_musculus 0 1105
ENSMUST00000173336 Vars-014 retained_intron Mus_musculus 0 588
ENSMUST00000173911 Vars-007 retained_intron Mus_musculus 0 431
ENSMUST00000174084 Vars-010 retained_intron Mus_musculus 0 309
ENSMUST00000172999 Vars-008 retained_intron Mus_musculus 0 268
ENSMUST00000173302 Vars-009 retained_intron Mus_musculus 0 217

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