C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: valyl-tRNA synthetase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000007029 Vars 10090 + 17:35000987-35016322 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087315 Vars-002 35000987-35016322 protein_coding
  ENSMUST00000172570 Vars-005 35002657-35004852 protein_coding
  ENSMUST00000172637 Vars-003 35002714-35016322 retained_intron
  ENSMUST00000172656 Vars-006 35004294-35005061 retained_intron
  ENSMUST00000172741 Vars-012 35004712-35005329 retained_intron
  ENSMUST00000172999 Vars-008 35013283-35014469 retained_intron
  ENSMUST00000173142 Vars-011 35013827-35015047 protein_coding
  ENSMUST00000173302 Vars-009 35013836-35014837 retained_intron
  ENSMUST00000173336 Vars-014 35012164-35013082 retained_intron
  ENSMUST00000173584 Vars-001 35001051-35016030 protein_coding
  ENSMUST00000173911 Vars-007 35011215-35012399 retained_intron
  ENSMUST00000174084 Vars-010 35014965-35016011 retained_intron
  ENSMUST00000174260 Vars-004 35001317-35004802 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087315ENSMUST00000172637ENSMUST00000172741ENSMUST00000173336ENSMUST00000173584ENSMUST00000174260
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087315 15.557±5.43 11.332±2.85 11.685±0.89 22.945±7.02 32.063±8.88 17.147±5.27 5.797±2.30 8.925±1.69 18.535±13.04 13.289±1.32 8.519±0.95 28.514±7.14 17.747±13.61 102.440±33.02
ENSMUST00000172637 4.734±1.39 N/A 4.150±0.31 N/A 4.368±2.25 7.291±1.58 0.997±0.00 2.520±0.08 6.120±1.60 6.409±0.49 N/A 7.360±2.99 2.684±0.71 N/A
ENSMUST00000172741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 233.506±0.00
ENSMUST00000173336 N/A N/A N/A 48.132±0.00 N/A N/A N/A N/A N/A N/A N/A 101.982±0.00 N/A 189.432±0.00
ENSMUST00000173584 N/A 17.788±3.14 N/A N/A N/A 5.074±0.00 1.299±0.00 N/A 2.186±0.00 N/A 1.341±0.00 9.935±0.00 5.452±0.00 N/A
ENSMUST00000174260 25.115±10.79 21.773±2.12 N/A N/A 70.353±21.85 30.304±4.74 N/A 12.681±2.49 N/A 30.274±3.74 N/A 60.493±9.90 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002161 IEA aminoacyl-tRNA editing activity
GO:0004832 IEA valine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006438 IEA valyl-tRNA aminoacylation
GO:0006450 IEA regulation of translational fidelity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044575 vars valyl-tRNA synthetase protein_coding Danio_rerio
ENSG00000204394 VARS valyl-tRNA synthetase protein_coding Homo_sapiens

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