C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: keratin 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204889 KRT40 9606 - 17:40977716-40987135 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000377755 KRT40-201 40977716-40984308 protein_coding
  ENST00000398486 KRT40-002 40977882-40987135 protein_coding
  ENST00000461923 KRT40-001 40977716-40987001 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLungOvaryTestisENST00000377755ENST00000398486
Transcript ID Brain Colon Kidney Lung Ovary Testis
ENST00000377755 N/A N/A N/A N/A 0.020±0.00 N/A
ENST00000398486 0.098±0.00 0.067±0.00 0.031±0.00 0.242±0.00 0.092±0.00 0.182±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000P CGP 17:40958417-40987135
CIL_0004QI CIL_0004QI_0001 CGP 17:40977716-40994133

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000212 zgc:92061 zgc:92061 protein_coding Danio_rerio
ENSDARG00000014356 zgc:92035 zgc:92035 protein_coding Danio_rerio
ENSDARG00000022334 BX469912.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000023082 krt1-19d keratin, type 1, gene 19d protein_coding Danio_rerio
ENSDARG00000036832 cyt1l type I cytokeratin, enveloping layer, like protein_coding Danio_rerio
ENSDARG00000036834 zgc:109868 zgc:109868 protein_coding Danio_rerio
ENSDARG00000036840 krt15 keratin 15 protein_coding Danio_rerio
ENSDARG00000044975 zgc:153629 zgc:153629 protein_coding Danio_rerio
ENSDARG00000044976 zgc:136902 zgc:136902 protein_coding Danio_rerio
ENSDARG00000090268 si:dkeyp-113d7.4 si:dkeyp-113d7.4 protein_coding Danio_rerio
ENSDARG00000092947 cyt1 type I cytokeratin, enveloping layer protein_coding Danio_rerio
ENSDARG00000094041 krt17 keratin 17 protein_coding Danio_rerio
ENSDARG00000095147 wu:fb17f05 wu:fb17f05 protein_coding Danio_rerio
ENSMUSG00000059169 Krt40 keratin 40 protein_coding Mus_musculus

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