C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: keratin 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000059169 Krt40 10090 - 11:99537485-99543158 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074253 Krt40-001 99537485-99543158 protein_coding
  ENSMUST00000107443 Krt40-002 99537485-99543158 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastOvaryTestisENSMUST00000074253ENSMUST00000107443
Transcript ID Adipose Bladder Breast Ovary Testis
ENSMUST00000074253 0.072±0.00 N/A N/A N/A 0.146±0.01
ENSMUST00000107443 N/A 0.008±0.00 0.034±0.00 0.108±0.00 0.095±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_001A CGP 11:99514114-99543158
CIL_0004QI CIL_0004QI_0002 CGP 11:99537485-99550865

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000212 zgc:92061 zgc:92061 protein_coding Danio_rerio
ENSDARG00000014356 zgc:92035 zgc:92035 protein_coding Danio_rerio
ENSDARG00000022334 BX469912.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000023082 krt1-19d keratin, type 1, gene 19d protein_coding Danio_rerio
ENSDARG00000036832 cyt1l type I cytokeratin, enveloping layer, like protein_coding Danio_rerio
ENSDARG00000036834 zgc:109868 zgc:109868 protein_coding Danio_rerio
ENSDARG00000036840 krt15 keratin 15 protein_coding Danio_rerio
ENSDARG00000044975 zgc:153629 zgc:153629 protein_coding Danio_rerio
ENSDARG00000044976 zgc:136902 zgc:136902 protein_coding Danio_rerio
ENSDARG00000090268 si:dkeyp-113d7.4 si:dkeyp-113d7.4 protein_coding Danio_rerio
ENSDARG00000092947 cyt1 type I cytokeratin, enveloping layer protein_coding Danio_rerio
ENSDARG00000094041 krt17 keratin 17 protein_coding Danio_rerio
ENSDARG00000095147 wu:fb17f05 wu:fb17f05 protein_coding Danio_rerio
ENSG00000204889 KRT40 keratin 40 protein_coding Homo_sapiens

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