C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: keratin 6A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205420 KRT6A 9606 - 12:52487174-52493257 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330722 KRT6A-001 52487174-52493257 protein_coding
  ENST00000548735 KRT6A-005 52489896-52490622 retained_intron
  ENST00000549600 KRT6A-004 52490035-52491157 retained_intron
  ENST00000549754 KRT6A-003 52490280-52491625 retained_intron
  ENST00000549898 KRT6A-002 52489977-52492709 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000330722ENST00000548735ENST00000549600ENST00000549898
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000330722 1.761±0.00 0.053±0.00 N/A 0.023±0.01 0.103±0.00 0.027±0.00 0.270±0.00 3.789±0.00 237.286±291.74 80.385±44.78 0.447±0.31
ENST00000548735 N/A N/A N/A N/A N/A 0.437±0.00 N/A N/A N/A N/A N/A
ENST00000549600 N/A N/A N/A N/A N/A N/A N/A 0.779±0.00 N/A N/A N/A
ENST00000549898 N/A N/A 0.040±0.00 0.011±0.00 N/A N/A 0.076±0.00 N/A 161.941±0.00 11.995±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_000B CGP 12:52468516-52493257
CIL_00033Q CIL_00033Q_000N CGP 12:52487174-52520687

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 NAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005882 IEA intermediate filament
GO:0008284 NAS positive regulation of cell proliferation
GO:0016020 IDA membrane
GO:0030154 NAS cell differentiation
GO:0045095 IEA keratin filament
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017624 krt4 keratin 4 protein_coding Danio_rerio
ENSDARG00000043242 si:dkey-222f2.1 si:dkey-222f2.1 protein_coding Danio_rerio
ENSDARG00000058358 krt8 keratin 8 protein_coding Danio_rerio
ENSDARG00000058371 krt5 keratin 5 protein_coding Danio_rerio
ENSDARG00000058462 zgc:158846 zgc:158846 protein_coding Danio_rerio
ENSMUSG00000023041 Krt6b keratin 6B protein_coding Mus_musculus
ENSMUSG00000058354 Krt6a keratin 6A protein_coding Mus_musculus

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