C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330722 KRT6A-001 ENSG00000205420 9606 - 12:52487174-52493257 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000330722
Transcript ID Adipose Adrenal Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000330722 1.761±0.00 0.053±0.00 0.023±0.01 0.103±0.00 0.027±0.00 0.270±0.00 3.789±0.00 237.286±291.74 80.385±44.78 0.447±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_000B CGP 12:52468516-52493257
CIL_00033Q CIL_00033Q_000N CGP 12:52487174-52520687

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 NAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005882 IEA intermediate filament
GO:0008284 NAS positive regulation of cell proliferation
GO:0016020 IDA membrane
GO:0030154 NAS cell differentiation
GO:0045095 IEA keratin filament
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023788 Krt6a-201 protein_coding Mus_musculus 0 1796
ENSMUST00000023786 Krt6b-201 protein_coding Mus_musculus 0 1759
ENSMUST00000023709 Krt5-001 protein_coding Mus_musculus 0 1301
ENSMUST00000062879 Gm5414-201 protein_coding Mus_musculus 0 1149
ENSMUST00000042957 Krt75-001 protein_coding Mus_musculus 0 891
ENSMUST00000100184 Gm5478-201 protein_coding Mus_musculus 0 870
ENSMUST00000023714 4732456N10Rik-001 protein_coding Mus_musculus 0 817
ENSMUST00000100179 Krt76-001 protein_coding Mus_musculus 0 699
ENSMUST00000063292 Krt73-001 protein_coding Mus_musculus 0 625
ENSMUST00000023799 Krt79-001 protein_coding Mus_musculus 0 597
ENSMUST00000068904 Krt7-001 protein_coding Mus_musculus 0 555
ENSMUST00000023952 Krt8-201 protein_coding Mus_musculus 0 549
ENSMUST00000087996 Krt77-001 protein_coding Mus_musculus 0 449
ENSMUST00000131069 Krt7-002 retained_intron Mus_musculus 0 431
ENSMUST00000023790 Krt1-201 protein_coding Mus_musculus 0 394
ENSDART00000081223 krt5-201 protein_coding Danio_rerio 0 387
ENSDART00000129044 krt5-001 protein_coding Danio_rerio 0 387
ENSDART00000081215 krt8-001 protein_coding Danio_rerio 0 339
ENSDART00000146185 krt5-003 protein_coding Danio_rerio 0 270
ENSDART00000142261 krt8-002 retained_intron Danio_rerio 1.99965e-42 178

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