C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: carnitine palmitoyltransferase 1B (muscle)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205560 CPT1B 9606 - 22:50568861-50578465 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000312108 CPT1B-004 50568862-50578417 protein_coding
  ENST00000360719 CPT1B-201 50569338-50577915 protein_coding
  ENST00000395650 CPT1B-001 50569084-50578455 protein_coding
  ENST00000405237 CPT1B-005 50568861-50578020 protein_coding
  ENST00000417176 CPT1B-008 50576940-50578246 protein_coding
  ENST00000423069 CPT1B-020 50572875-50576064 nonsense_mediated_decay
  ENST00000457250 CPT1B-202 50569338-50577915 protein_coding
  ENST00000460853 CPT1B-007 50576626-50578465 retained_intron
  ENST00000461117 CPT1B-009 50576707-50577868 retained_intron
  ENST00000475238 CPT1B-013 50571883-50573100 retained_intron
  ENST00000476790 CPT1B-010 50576056-50576903 retained_intron
  ENST00000479886 CPT1B-011 50574365-50574982 retained_intron
  ENST00000497224 CPT1B-014 50570348-50572297 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000312108ENST00000360719ENST00000395650ENST00000405237ENST00000423069ENST00000457250ENST00000497224
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000312108 N/A N/A 0.329±0.00 N/A 1.817±0.00 80.006±73.53 N/A N/A N/A 20.696±13.73 0.377±0.00 2.629±0.12 N/A
ENST00000360719 1.990±0.00 0.519±0.00 N/A 1.060±0.00 N/A 9.860±0.00 N/A 1.046±0.00 N/A 16.005±5.98 N/A N/A 18.551±0.00
ENST00000395650 N/A N/A 1.385±0.00 N/A 1.011±0.00 2.775±0.00 4.983±0.00 N/A N/A 14.104±0.00 N/A N/A N/A
ENST00000405237 N/A N/A N/A N/A N/A N/A N/A N/A 2.317±0.00 N/A N/A N/A 42.142±16.38
ENST00000423069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.373±0.00 N/A N/A
ENST00000457250 N/A 0.567±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497224 N/A 1.493±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028I CIL_00028I_0001 CGP 22:50551112-50578465
CIL_0002HR CIL_0002HR_0001 CGP 22:50568861-50582965

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004095 IEA carnitine O-palmitoyltransferase activity
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005741 TAS mitochondrial outer membrane
GO:0006635 IEA fatty acid beta-oxidation
GO:0006853 TAS carnitine shuttle
GO:0008152 IEA metabolic process
GO:0015909 IEA long-chain fatty acid transport
GO:0016021 IEA integral component of membrane
GO:0016746 IEA transferase activity, transferring acyl groups
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058285 cpt1b carnitine palmitoyltransferase 1B (muscle) protein_coding Danio_rerio
ENSMUSG00000078937 Cpt1b carnitine palmitoyltransferase 1b, muscle protein_coding Mus_musculus

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