C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: carnitine palmitoyltransferase 1B (muscle)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395650 CPT1B-001 ENSG00000205560 9606 - 22:50569084-50578455 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyMuscleENST00000395650
Transcript ID Brain Colon Heart Kidney Muscle
ENST00000395650 1.385±0.00 1.011±0.00 2.775±0.00 4.983±0.00 14.104±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028I CIL_00028I_0001 CGP 22:50551112-50578465
CIL_0002HR CIL_0002HR_0001 CGP 22:50568861-50582965

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004095 IEA carnitine O-palmitoyltransferase activity
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005741 TAS mitochondrial outer membrane
GO:0006635 IEA fatty acid beta-oxidation
GO:0006853 TAS carnitine shuttle
GO:0008152 IEA metabolic process
GO:0015909 IEA long-chain fatty acid transport
GO:0016021 IEA integral component of membrane
GO:0016746 IEA transferase activity, transferring acyl groups
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109313 Cpt1b-001 protein_coding Mus_musculus 0 2619
ENSMUST00000052315 Chkb-002 retained_intron Mus_musculus 0 1458
ENSMUST00000168879 Cpt1b-004 nonsense_mediated_decay Mus_musculus 0 470
ENSMUST00000168376 Cpt1b-002 protein_coding Mus_musculus 0 230

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