C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small EDRK-rich factor 1B (centromeric)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205572 SERF1B 9606 + 5:70025247-70043113 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380750 SERF1B-001 70025269-70043113 protein_coding
  ENST00000380751 SERF1B-004 70025247-70032696 protein_coding
  ENST00000503931 SERF1B-008 70025356-70030122 protein_coding
  ENST00000506542 SERF1B-002 70025373-70043103 protein_coding
  ENST00000507177 SERF1B-005 70025563-70026515 processed_transcript
  ENST00000513144 SERF1B-009 70026264-70032694 retained_intron
  ENST00000514285 SERF1B-006 70025587-70032493 processed_transcript
  ENST00000515588 SERF1B-007 70025534-70042008 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000506542ENST00000515588
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000506542 N/A 0.056±0.00 0.094±0.00 0.037±0.01 0.143±0.00 0.033±0.00 0.081±0.00 0.128±0.08 0.046±0.00 0.179±0.00 0.109±0.10 0.058±0.03 0.015±0.01
ENST00000515588 0.125±0.00 0.099±0.00 0.370±0.02 0.270±0.10 0.334±0.00 0.100±0.00 0.102±0.00 N/A 0.015±0.00 0.217±0.00 0.139±0.00 0.062±0.00 0.147±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZD CIL_0004ZD_0002 CGP 5:70025247-70078522

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0007399 TAS nervous system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074340 serf2 small EDRK-rich factor 2 protein_coding Danio_rerio
ENSDARG00000075881 si:ch211-39k3.2 si:ch211-39k3.2 protein_coding Danio_rerio
ENSMUSG00000021643 Serf1 small EDRK-rich factor 1 protein_coding Mus_musculus

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