C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: translin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389682 TSN-001 ENSG00000211460 9606 + 2:121755533-121767853 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389682
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389682 6.337±0.00 5.181±0.00 0.753±0.00 7.351±0.03 4.883±0.00 2.282±0.95 2.803±0.79 6.738±3.38 4.024±1.33 1.410±0.77 1.485±0.33 13.881±4.37 4.252±0.69 13.536±0.14

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0004519 IEA endonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006310 TAS DNA recombination
GO:0032403 IEA protein complex binding
GO:0043565 IEA sequence-specific DNA binding
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027623 Tsn-001 protein_coding Mus_musculus 0 1070
ENSMUST00000188512 Tsn-006 retained_intron Mus_musculus 0 673
ENSMUST00000189768 Tsn-002 processed_transcript Mus_musculus 0 473
ENSMUST00000186608 Tsn-003 retained_intron Mus_musculus 0 438
ENSMUST00000188882 Tsn-005 retained_intron Mus_musculus 0 383
ENSMUST00000186163 Tsn-004 retained_intron Mus_musculus 1e-37 163

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