C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DENN/MADD domain containing 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000213047 DENND1B 9606 - 1:197504748-197775696 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000235453 DENND1B-004 197552255-197775192 protein_coding
  ENST00000294737 DENND1B-008 197509644-197775307 nonsense_mediated_decay
  ENST00000294738 DENND1B-012 197658300-197735529 processed_transcript
  ENST00000367396 DENND1B-003 197552255-197775325 protein_coding
  ENST00000391979 DENND1B-001 197504748-197583220 protein_coding
  ENST00000422998 DENND1B-010 197642773-197775633 protein_coding
  ENST00000463124 DENND1B-006 197545567-197546773 retained_intron
  ENST00000468589 DENND1B-005 197734009-197775426 retained_intron
  ENST00000477581 DENND1B-009 197735658-197775696 processed_transcript
  ENST00000495550 DENND1B-011 197735250-197774607 retained_intron
  ENST00000496935 DENND1B-007 197605482-197658350 retained_intron
  ENST00000620048 DENND1B-201 197504751-197775493 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000235453ENST00000294737ENST00000367396ENST00000391979ENST00000496935ENST00000620048
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000235453 N/A N/A N/A 0.461±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000294737 N/A N/A N/A N/A N/A N/A N/A N/A 1.228±0.00 N/A N/A N/A N/A N/A
ENST00000367396 N/A N/A N/A N/A N/A 2.431±0.00 N/A N/A N/A N/A N/A N/A N/A 0.735±0.00
ENST00000391979 0.198±0.00 0.373±0.00 N/A 0.378±0.00 0.662±0.00 0.175±0.00 0.563±0.00 1.570±0.00 0.409±0.00 N/A N/A 0.559±0.33 0.122±0.03 N/A
ENST00000496935 N/A N/A N/A N/A 3.015±0.00 2.574±0.00 N/A N/A 1.505±0.00 N/A N/A N/A N/A N/A
ENST00000620048 0.188±0.00 N/A 1.583±0.00 0.210±0.13 0.350±0.00 1.984±0.00 0.946±0.05 1.071±0.63 0.538±0.37 2.065±0.94 0.531±0.29 0.578±0.08 0.216±0.00 0.433±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LY CIL_0001LY_0002 CGP 1:197268204-197775696

Gene Ontology
GO IDEvidence TypeGO Description
GO:0015031 IEA protein transport
GO:0017112 IDA Rab guanyl-nucleotide exchange factor activity
GO:0031410 IEA cytoplasmic vesicle
GO:0032851 IDA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029374 dennd1b DENN/MADD domain containing 1B protein_coding Danio_rerio
ENSDARG00000090356 DENND1B (2 of 2) DENN/MADD domain containing 1B protein_coding Danio_rerio
ENSMUSG00000056268 Dennd1b DENN/MADD domain containing 1B protein_coding Mus_musculus

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