C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001LY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000062245-ENSDARG00000029374 CGP 7955 22:24354001-24509855
GeneTranscriptPositionBiotype
ENSDARG00000029374 (dennd1b)
DENN/MADD domain containing 1B 		ENSDART00000105614 (dennd1b-201) 24420231-24509855 protein_coding
ENSDART00000134384 (dennd1b-001) 24419319-24468620 protein_coding
ENSDARG00000062245 (crb1)
crumbs homolog 1 (Drosophila) 		ENSDART00000089774 (crb1-201) 24354075-24408939 protein_coding
ENSDART00000141006 (crb1-001) 24354001-24406138 protein_coding
ENSDARG00000094476 (si:dkey-114d20.9)
si:dkey-114d20.9 		ENSDART00000134994 (si:dkey-114d20.9-001) 24405976-24406982 processed_transcript
CIL_0001LY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000134376-ENSG00000213047 CGP 9606 1:197268204-197775696
GeneTranscriptPositionBiotype
ENSG00000134376 (CRB1)
crumbs family member 1, photoreceptor morphogenesis associated 		ENST00000367397 (CRB1-003) 197413829-197444819 protein_coding
ENST00000367399 (CRB1-005) 197268413-197477879 protein_coding
ENST00000367400 (CRB1-004) 197268278-197478455 protein_coding
ENST00000448952 (CRB1-002) 197442170-197478455 protein_coding
ENST00000475659 (CRB1-006) 197268276-197358128 retained_intron
ENST00000476483 (CRB1-008) 197360349-197421441 processed_transcript
ENST00000480086 (CRB1-007) 197422811-197427837 processed_transcript
ENST00000484075 (CRB1-001) 197268278-197478455 nonsense_mediated_decay
ENST00000535699 (CRB1-201) 197268204-197478454 protein_coding
ENST00000538660 (CRB1-202) 197268204-197478454 protein_coding
ENSG00000213046 (EEF1A1P32)
eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 		ENST00000418613 (EEF1A1P32-001) 197688760-197690627 unprocessed_pseudogene
ENSG00000213047 (DENND1B)
DENN/MADD domain containing 1B 		ENST00000235453 (DENND1B-004) 197552255-197775192 protein_coding
ENST00000294737 (DENND1B-008) 197509644-197775307 nonsense_mediated_decay
ENST00000294738 (DENND1B-012) 197658300-197735529 processed_transcript
ENST00000367396 (DENND1B-003) 197552255-197775325 protein_coding
ENST00000391979 (DENND1B-001) 197504748-197583220 protein_coding
ENST00000422998 (DENND1B-010) 197642773-197775633 protein_coding
ENST00000463124 (DENND1B-006) 197545567-197546773 retained_intron
ENST00000468589 (DENND1B-005) 197734009-197775426 retained_intron
ENST00000477581 (DENND1B-009) 197735658-197775696 processed_transcript
ENST00000495550 (DENND1B-011) 197735250-197774607 retained_intron
ENST00000496935 (DENND1B-007) 197605482-197658350 retained_intron
ENST00000620048 (DENND1B-201) 197504751-197775493 protein_coding
ENSG00000221879 (MRPS21P3)
mitochondrial ribosomal protein S21 pseudogene 3 		ENST00000436696 (MRPS21P3-001) 197363817-197364078 processed_pseudogene
ENSG00000224901 (RP11-448G4.4)
 ENST00000440885 (RP11-448G4.4-001) 197757319-197761965 antisense
ENSG00000233040 (FAM204BP)
family with sequence similarity 204, member B, pseudogene 		ENST00000369171 (FAM204BP-001) 197746751-197747451 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001LY_0001ENSDARG00000029374ENSDART00000105614ENSDART00000134384ENSDARG00000062245ENSDART00000089774ENSDART00000141006ENSDARG00000094476ENSDART00000134994CIL_0001LY_0002ENSG00000134376ENST00000367397ENST00000367399ENST00000367400ENST00000448952ENST00000475659ENST00000476483ENST00000480086ENST00000484075ENST00000535699ENST00000538660ENSG00000213046ENST00000418613ENSG00000213047ENST00000235453ENST00000294737ENST00000294738ENST00000367396ENST00000391979ENST00000422998ENST00000463124ENST00000468589ENST00000477581ENST00000495550ENST00000496935ENST00000620048ENSG00000221879ENST00000436696ENSG00000224901ENST00000440885ENSG00000233040ENST00000369171
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001LY_0001ENSDARG00000029374ENSDART00000105614ENSDART00000134384ENSDARG00000062245ENSDART00000089774ENSDARG00000094476ENSDART00000134994CIL_0001LY_0002ENSG00000134376ENST00000367397ENST00000367399ENST00000367400ENST00000448952ENST00000475659ENST00000476483ENST00000484075ENST00000535699ENST00000538660ENSG00000213046ENST00000418613ENSG00000213047ENST00000235453ENST00000294737ENST00000367396ENST00000391979ENST00000496935ENST00000620048ENSG00000221879ENST00000436696ENSG00000224901ENST00000440885ENSG00000233040ENST00000369171
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000029374 ENSDART00000105614 N/A N/A N/A 0.921±0.00 N/A N/A 0.488±0.40 0.599±0.00 0.186±0.00 N/A N/A N/A N/A N/A
ENSDART00000134384 N/A N/A N/A N/A N/A N/A 0.082±0.03 0.204±0.00 0.073±0.00 N/A N/A N/A N/A N/A
ENSDARG00000062245 ENSDART00000089774 N/A N/A N/A 0.961±0.50 N/A N/A 0.092±0.07 0.120±0.02 0.013±0.00 N/A 0.063±0.00 N/A N/A N/A
ENSDART00000141006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000094476 ENSDART00000134994 N/A N/A N/A 2.553±0.49 N/A N/A 0.264±0.00 N/A N/A N/A 0.133±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134376 ENST00000367397 0.002±0.00 0.005±0.00 0.012±0.00 N/A N/A N/A N/A N/A 0.012±0.01 N/A N/A N/A N/A N/A
ENST00000367399 N/A N/A N/A 1.002±0.06 N/A N/A 0.010±0.00 N/A N/A N/A 0.242±0.00 0.078±0.05 0.039±0.00 N/A
ENST00000367400 N/A N/A N/A 1.362±0.00 N/A N/A N/A N/A N/A N/A N/A 0.066±0.00 N/A 0.458±0.13
ENST00000448952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.279±0.16 N/A N/A
ENST00000475659 N/A N/A 0.179±0.00 1.051±0.26 0.015±0.00 0.125±0.07 0.074±0.00 N/A 0.020±0.00 N/A N/A N/A N/A N/A
ENST00000476483 N/A N/A N/A N/A 0.240±0.00 N/A N/A N/A N/A N/A N/A 0.169±0.00 0.083±0.00 N/A
ENST00000480086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484075 N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535699 N/A N/A N/A 0.637±0.00 N/A N/A N/A 0.077±0.00 N/A N/A N/A N/A N/A N/A
ENST00000538660 N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A 0.024±0.00 N/A 0.031±0.02 N/A N/A
ENSG00000213046 ENST00000418613 0.051±0.00 0.018±0.00 0.290±0.00 0.210±0.00 0.291±0.27 0.180±0.17 N/A 0.150±0.07 N/A 0.186±0.12 N/A 0.101±0.12 N/A 0.014±0.01
ENSG00000213047 ENST00000235453 N/A N/A N/A 0.461±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000294737 N/A N/A N/A N/A N/A N/A N/A N/A 1.228±0.00 N/A N/A N/A N/A N/A
ENST00000294738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000367396 N/A N/A N/A N/A N/A 2.431±0.00 N/A N/A N/A N/A N/A N/A N/A 0.735±0.00
ENST00000391979 0.198±0.00 0.373±0.00 N/A 0.378±0.00 0.662±0.00 0.175±0.00 0.563±0.00 1.570±0.00 0.409±0.00 N/A N/A 0.559±0.33 0.122±0.03 N/A
ENST00000422998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496935 N/A N/A N/A N/A 3.015±0.00 2.574±0.00 N/A N/A 1.505±0.00 N/A N/A N/A N/A N/A
ENST00000620048 0.188±0.00 N/A 1.583±0.00 0.210±0.13 0.350±0.00 1.984±0.00 0.946±0.05 1.071±0.63 0.538±0.37 2.065±0.94 0.531±0.29 0.578±0.08 0.216±0.00 0.433±0.00
ENSG00000221879 ENST00000436696 N/A N/A N/A 0.335±0.17 N/A N/A N/A 0.083±0.00 N/A 0.084±0.00 0.074±0.00 0.261±0.00 N/A 0.428±0.00
ENSG00000224901 ENST00000440885 N/A 0.208±0.00 N/A 0.051±0.00 N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000233040 ENST00000369171 N/A N/A 0.362±0.00 N/A 0.743±0.00 2.933±0.00 0.223±0.00 0.924±0.00 0.090±0.00 0.762±0.00 0.561±0.00 0.501±0.00 N/A 0.016±0.00

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