C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: voltage-dependent anion channel 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395044 VDAC1-003 ENSG00000213585 9606 - 5:133971915-134004742 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395044
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395044 22.904±0.00 21.347±0.00 9.012±0.00 54.902±1.34 25.017±15.11 23.944±9.03 72.340±48.47 48.448±22.12 24.515±11.89 21.938±6.19 76.497±61.63 21.819±8.95 24.697±10.12 13.406±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GL CIL_0000GL_0002 CGP 5:133955502-134005133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0005741 IEA mitochondrial outer membrane
GO:0005886 IEA plasma membrane
GO:0006820 IEA anion transport
GO:0006915 TAS apoptotic process
GO:0008308 ISS voltage-gated anion channel activity
GO:0015288 IEA porin activity
GO:0016020 ISS membrane
GO:0016032 IEA viral process
GO:0019901 IPI protein kinase binding
GO:0030855 IEP epithelial cell differentiation
GO:0042645 IDA mitochondrial nucleoid
GO:0044070 IEA regulation of anion transport
GO:0046930 TAS pore complex
GO:0055085 IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102758 Vdac1-001 protein_coding Mus_musculus 0 1356
ENSMUST00000020673 Vdac1-005 protein_coding Mus_musculus 0 1101
ENSMUST00000125694 Vdac1-003 nonsense_mediated_decay Mus_musculus 0 915
ENSMUST00000162504 Gm8459-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000153339 Vdac1-004 retained_intron Mus_musculus 0 405
ENSMUST00000157052 Vdac1-002 processed_transcript Mus_musculus 0 398
ENSMUST00000118581 Gm15132-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000117896 Gm7910-001 processed_pseudogene Mus_musculus 0 239

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