C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: voltage-dependent anion channel 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425992 VDAC1-004 ENSG00000213585 9606 - 5:133980729-134004635 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastMuscleOvaryPlacentaTestisENST00000425992
Transcript ID Breast Muscle Ovary Placenta Testis
ENST00000425992 10.367±0.00 58.625±0.00 58.119±0.00 45.683±0.00 11.151±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GL CIL_0000GL_0002 CGP 5:133955502-134005133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005741 IEA mitochondrial outer membrane
GO:0006820 IEA anion transport
GO:0044070 IEA regulation of anion transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020673 Vdac1-005 protein_coding Mus_musculus 0 686
ENSMUST00000125694 Vdac1-003 nonsense_mediated_decay Mus_musculus 0 682
ENSMUST00000102758 Vdac1-001 protein_coding Mus_musculus 0 682
ENSMUST00000162504 Gm8459-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000157052 Vdac1-002 processed_transcript Mus_musculus 0 399
ENSMUST00000118581 Gm15132-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000117896 Gm7910-001 processed_pseudogene Mus_musculus 0 239

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