C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: casein kinase 1, epsilon
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000213923 CSNK1E 9606 - 22:38290691-38398522 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359867 CSNK1E-003 38290691-38318084 protein_coding
  ENST00000366216 CSNK1E-006 38291930-38294527 protein_coding
  ENST00000396832 CSNK1E-201 38290692-38317408 protein_coding
  ENST00000400206 CSNK1E-001 38291367-38398522 protein_coding
  ENST00000403904 CSNK1E-002 38293250-38317439 protein_coding
  ENST00000405675 CSNK1E-005 38296206-38317439 protein_coding
  ENST00000413574 CSNK1E-004 38296205-38317411 protein_coding
  ENST00000430335 CSNK1E-008 38299956-38316973 protein_coding
  ENST00000431611 CSNK1E-011 38293260-38300763 nonsense_mediated_decay
  ENST00000431632 CSNK1E-016 38292314-38298852 protein_coding
  ENST00000442216 CSNK1E-014 38297602-38300025 nonsense_mediated_decay
  ENST00000451964 CSNK1E-009 38298029-38303009 protein_coding
  ENST00000494610 CSNK1E-012 38293903-38294534 retained_intron
  ENST00000495232 CSNK1E-013 38292909-38294459 retained_intron
  ENST00000498529 CSNK1E-015 38296626-38300065 processed_transcript
  ENST00000612795 CSNK1E-010 38298580-38302990 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359867ENST00000366216ENST00000396832ENST00000403904ENST00000405675ENST00000413574ENST00000430335ENST00000431632ENST00000451964ENST00000495232
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359867 N/A N/A 0.757±0.00 3.447±0.00 1.174±0.00 N/A 0.447±0.00 N/A N/A N/A N/A 2.830±0.00 N/A N/A
ENST00000366216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.130±0.00 N/A N/A N/A
ENST00000396832 43.679±0.00 16.896±0.00 N/A 25.027±0.00 20.275±0.00 10.582±9.73 11.907±0.00 10.683±0.00 2.014±1.08 55.897±0.00 18.257±0.00 35.435±8.38 19.388±5.99 13.292±7.13
ENST00000403904 35.863±0.00 N/A N/A 19.469±13.28 N/A 26.304±0.00 8.381±6.22 1.063±0.00 2.120±0.00 40.835±35.47 11.038±7.93 16.630±13.23 15.766±0.00 15.482±2.71
ENST00000405675 N/A 14.490±0.00 N/A N/A 8.311±5.83 1.227±0.00 N/A N/A 1.364±0.58 N/A N/A 13.527±0.00 6.487±0.00 N/A
ENST00000413574 N/A N/A 1.343±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430335 N/A N/A N/A N/A 3.716±0.00 N/A N/A N/A N/A N/A 4.000±0.00 N/A N/A N/A
ENST00000431632 N/A N/A N/A N/A N/A N/A N/A 2.216±0.00 N/A N/A N/A N/A N/A N/A
ENST00000451964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.262±0.00 22.790±0.00 15.111±0.00
ENST00000495232 N/A N/A 3.423±0.00 N/A 5.919±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BX CIL_0008BX_0001 VISTA 22:37696030-38296592
CIL_0008KA CIL_0008KA_0001 VISTA 22:37698338-38299192
CIL_00082J CIL_00082J_0001 VISTA 22:37733233-38334508
CIL_0008C1 CIL_0008C1_0001 VISTA 22:37746133-38346872
CIL_00082K CIL_00082K_0001 VISTA 22:37750385-38350990
CIL_0008MM CIL_0008MM_0001 VISTA 22:37872841-38473542
CIL_0005DG CIL_0005DG_0001 CGP 22:38219291-38398522
CIL_0005DH CIL_0005DH_0001 CGP 22:38290691-38455199

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0004672 ISS:IEA protein kinase activity
GO:0004674 IDA protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006281 TAS DNA repair
GO:0006468 ISS:IEA protein phosphorylation
GO:0007165 TAS signal transduction
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0030178 IEA negative regulation of Wnt signaling pathway
GO:0030529 IEA ribonucleoprotein complex
GO:0032436 ISS positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032922 ISS circadian regulation of gene expression
GO:0034613 IEA cellular protein localization
GO:0042752 ISS regulation of circadian rhythm
GO:0044822 IDA poly(A) RNA binding
GO:0090263 IEA positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045150 csnk1e casein kinase 1, epsilon protein_coding Danio_rerio
ENSMUSG00000022433 Csnk1e casein kinase 1, epsilon protein_coding Mus_musculus

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