C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: casein kinase 1, epsilon
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022433 Csnk1e 10090 - 15:79417856-79443919 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000117786 Csnk1e-001 79417856-79441999 protein_coding
  ENSMUST00000120859 Csnk1e-003 79419166-79442002 protein_coding
  ENSMUST00000122044 Csnk1e-002 79422481-79441818 protein_coding
  ENSMUST00000127155 Csnk1e-010 79419149-79421315 retained_intron
  ENSMUST00000135519 Csnk1e-004 79426468-79441818 protein_coding
  ENSMUST00000136003 Csnk1e-006 79424856-79429867 retained_intron
  ENSMUST00000137028 Csnk1e-008 79424738-79426444 retained_intron
  ENSMUST00000144790 Csnk1e-005 79426399-79439018 protein_coding
  ENSMUST00000145740 Csnk1e-009 79423644-79424299 retained_intron
  ENSMUST00000156043 Csnk1e-011 79430061-79443919 protein_coding
  ENSMUST00000156513 Csnk1e-007 79424166-79425559 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117786ENSMUST00000120859ENSMUST00000122044ENSMUST00000136003
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117786 16.033±4.10 12.804±3.48 13.169±0.00 17.517±3.73 11.714±1.24 4.923±1.21 7.884±0.25 6.036±2.43 2.393±0.99 21.514±5.16 6.158±2.89 21.512±2.64 16.923±12.98 0.500±0.00
ENSMUST00000120859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.444±0.00 N/A N/A N/A
ENSMUST00000122044 5.928±1.19 4.262±0.43 3.796±0.00 9.955±1.20 3.890±0.00 N/A 2.613±0.48 1.676±0.20 0.889±0.40 8.076±0.72 3.800±0.77 5.508±1.16 10.300±0.00 0.335±0.00
ENSMUST00000136003 N/A N/A N/A 53.816±9.00 N/A N/A N/A N/A 3.064±1.47 N/A N/A 36.672±0.00 54.047±0.00 1.721±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_0008MM CIL_0008MM_0002 VISTA 15:79023554-79624112
CIL_0005DG CIL_0005DG_0002 CGP 15:79360684-79443919
CIL_0005DH CIL_0005DH_0002 CGP 15:79417856-79505241

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004672 IDA protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006468 IDA protein phosphorylation
GO:0007623 TAS circadian rhythm
GO:0016055 IEA Wnt signaling pathway
GO:0030178 IGI negative regulation of Wnt signaling pathway
GO:0030529 IDA ribonucleoprotein complex
GO:0032436 IMP positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032922 IMP circadian regulation of gene expression
GO:0034613 IDA cellular protein localization
GO:0042752 IMP regulation of circadian rhythm
GO:0044822 IEA poly(A) RNA binding
GO:0090263 IGI positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045150 csnk1e casein kinase 1, epsilon protein_coding Danio_rerio
ENSG00000213923 CSNK1E casein kinase 1, epsilon protein_coding Homo_sapiens

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