C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: interferon regulatory factor 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000213928 IRF9 9606 + 14:24161053-24166565 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324076 IRF9-002 24162996-24166224 protein_coding
  ENST00000396864 IRF9-001 24161053-24166565 protein_coding
  ENST00000557894 IRF9-004 24161273-24166392 protein_coding
  ENST00000559229 IRF9-009 24163875-24164920 retained_intron
  ENST00000559284 IRF9-012 24161293-24164103 protein_coding
  ENST00000559863 IRF9-008 24163612-24164287 retained_intron
  ENST00000560275 IRF9-013 24161301-24164739 protein_coding
  ENST00000560311 IRF9-010 24165759-24166565 retained_intron
  ENST00000560365 IRF9-007 24161290-24163586 retained_intron
  ENST00000560542 IRF9-011 24164530-24165449 retained_intron
  ENST00000560852 IRF9-015 24161317-24163765 nonsense_mediated_decay
  ENST00000561009 IRF9-006 24161290-24163281 retained_intron
  ENST00000561342 IRF9-014 24161277-24165902 nonsense_mediated_decay
  ENST00000561412 IRF9-005 24161304-24162716 retained_intron
  ENST00000561415 IRF9-003 24161290-24166254 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396864ENST00000559284ENST00000560311ENST00000561415
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396864 10.534±0.00 N/A 2.355±0.00 11.795±2.76 1.600±0.00 24.570±0.00 7.789±4.00 28.419±0.00 2.684±0.00 47.990±2.11 25.189±0.70 23.105±0.00
ENST00000559284 N/A 8.899±0.00 10.934±0.00 33.607±0.00 N/A N/A 14.419±0.00 22.742±0.00 N/A 17.662±0.00 N/A N/A
ENST00000560311 N/A N/A 14.053±0.00 N/A 5.731±0.00 N/A N/A 30.061±0.00 N/A N/A 48.191±0.00 N/A
ENST00000561415 N/A N/A N/A N/A N/A N/A N/A 6.006±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00023F CIL_00023F_0001 CGP 14:24151218-24167402
CIL_0001CI CIL_0001CI_0001 CGP 14:24161053-24180257

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000975 IEA regulatory region DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007166 TAS cell surface receptor signaling pathway
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0045351 IEA type I interferon biosynthetic process
GO:0051607 IEA defense response to virus
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0060337 TAS type I interferon signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016457 irf9 interferon regulatory factor 9 protein_coding Danio_rerio
ENSMUSG00000002325 Irf9 interferon regulatory factor 9 protein_coding Mus_musculus

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