C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: interferon regulatory factor 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002325 Irf9 10090 + 14:55603571-55610030 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000126269 Irf9-006 55607275-55608733 retained_intron
  ENSMUST00000130697 Irf9-001 55603985-55610030 protein_coding
  ENSMUST00000134863 Irf9-002 55603571-55610030 protein_coding
  ENSMUST00000136109 Irf9-005 55604577-55605860 retained_intron
  ENSMUST00000138037 Irf9-003 55604579-55610030 protein_coding
  ENSMUST00000145680 Irf9-004 55605820-55610027 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000126269ENSMUST00000130697ENSMUST00000134863ENSMUST00000138037ENSMUST00000145680
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000126269 N/A 42.254±6.70 N/A N/A 42.951±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130697 15.403±2.45 19.968±4.44 12.689±0.13 3.092±0.61 23.623±3.92 12.741±3.87 6.124±0.52 10.714±1.76 11.957±4.25 22.940±2.98 1.590±0.27 16.164±6.34 9.858±2.37 1.315±0.56
ENSMUST00000134863 N/A N/A N/A 4.462±0.50 N/A N/A N/A N/A 4.410±0.00 N/A N/A 3.581±0.00 N/A N/A
ENSMUST00000138037 N/A 22.032±1.04 N/A N/A 19.341±1.93 N/A N/A 6.956±0.00 6.740±1.35 N/A 2.051±0.26 11.436±3.61 13.326±7.78 N/A
ENSMUST00000145680 N/A N/A N/A N/A 4.586±0.00 N/A N/A N/A 3.750±0.00 N/A N/A 2.460±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031B CIL_00031B_0002 CGP 14:55587441-55603693
CIL_00023F CIL_00023F_0002 CGP 14:55591708-55610030
CIL_0001CI CIL_0001CI_0002 CGP 14:55603571-55625395

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000975 IEA regulatory region DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0045351 IMP type I interferon biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016457 irf9 interferon regulatory factor 9 protein_coding Danio_rerio
ENSG00000213928 IRF9 interferon regulatory factor 9 protein_coding Homo_sapiens

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