C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interferon regulatory factor 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396864 IRF9-001 ENSG00000213928 9606 + 14:24161053-24166565 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396864
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396864 10.534±0.00 2.355±0.00 11.795±2.76 1.600±0.00 24.570±0.00 7.789±4.00 28.419±0.00 2.684±0.00 47.990±2.11 25.189±0.70 23.105±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00023F CIL_00023F_0001 CGP 14:24151218-24167402
CIL_0001CI CIL_0001CI_0001 CGP 14:24161053-24180257

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000975 IEA regulatory region DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007166 TAS cell surface receptor signaling pathway
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0045351 IEA type I interferon biosynthetic process
GO:0051607 IEA defense response to virus
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0060337 TAS type I interferon signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000138037 Irf9-003 protein_coding Mus_musculus 0 505
ENSMUST00000130697 Irf9-001 protein_coding Mus_musculus 0 505
ENSMUST00000134863 Irf9-002 protein_coding Mus_musculus 0 505
ENSMUST00000126269 Irf9-006 retained_intron Mus_musculus 0 383
ENSMUST00000145680 Irf9-004 retained_intron Mus_musculus 0 342

Loading