C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetraspanin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000214063 TSPAN4 9606 + 11:842808-867116 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000346501 TSPAN4-017 847197-866776 protein_coding
  ENST00000397396 TSPAN4-201 842824-867116 protein_coding
  ENST00000397397 TSPAN4-001 842808-867111 protein_coding
  ENST00000397404 TSPAN4-202 844446-867116 protein_coding
  ENST00000397406 TSPAN4-203 844081-867116 protein_coding
  ENST00000397408 TSPAN4-204 842941-867116 protein_coding
  ENST00000397411 TSPAN4-006 842812-866817 protein_coding
  ENST00000409531 TSPAN4-005 848810-867111 protein_coding
  ENST00000409543 TSPAN4-007 844117-866857 protein_coding
  ENST00000464987 TSPAN4-002 847197-867109 retained_intron
  ENST00000468468 TSPAN4-003 862297-867109 retained_intron
  ENST00000494815 TSPAN4-004 863272-867111 retained_intron
  ENST00000524895 TSPAN4-012 847197-864653 retained_intron
  ENST00000525201 TSPAN4-015 844153-866676 protein_coding
  ENST00000525334 TSPAN4-016 843339-865753 protein_coding
  ENST00000526055 TSPAN4-013 847197-862834 retained_intron
  ENST00000527644 TSPAN4-010 849816-865740 protein_coding
  ENST00000529566 TSPAN4-014 862345-865825 retained_intron
  ENST00000530404 TSPAN4-011 843315-862741 protein_coding
  ENST00000532375 TSPAN4-018 847197-865942 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000346501ENST00000397396ENST00000397397ENST00000397404ENST00000397406ENST00000397408ENST00000397411ENST00000409531ENST00000409543ENST00000464987ENST00000468468ENST00000494815ENST00000524895ENST00000525201ENST00000525334ENST00000526055ENST00000527644ENST00000529566ENST00000532375
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000346501 22.066±0.00 N/A N/A N/A N/A 1.555±0.00 0.416±0.00 N/A N/A N/A N/A 18.269±15.79 26.531±7.58 4.824±0.00
ENST00000397396 N/A N/A N/A N/A 0.553±0.00 N/A N/A 0.434±0.00 N/A N/A N/A N/A N/A N/A
ENST00000397397 23.177±0.00 35.934±0.00 N/A 1.432±0.00 20.176±0.00 11.199±10.86 10.219±0.00 24.354±0.00 6.554±0.00 15.042±13.45 N/A 37.337±0.00 42.071±2.34 31.057±0.00
ENST00000397404 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.015±6.16 N/A 18.247±0.00 N/A N/A
ENST00000397406 N/A N/A N/A N/A 8.530±0.00 N/A N/A N/A N/A N/A 2.084±0.00 7.638±6.43 14.136±0.00 N/A
ENST00000397408 N/A N/A N/A N/A 9.138±0.00 N/A 5.555±0.00 N/A 2.091±0.00 N/A N/A 19.320±0.00 17.939±0.00 N/A
ENST00000397411 21.751±0.00 29.772±0.00 N/A N/A 18.629±0.00 15.179±0.00 N/A 9.961±0.00 4.577±0.00 19.620±0.00 1.638±0.00 27.223±5.04 27.960±2.41 N/A
ENST00000409531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.349±0.73 N/A N/A N/A
ENST00000409543 N/A N/A N/A N/A 0.571±0.00 N/A 0.407±0.00 N/A 1.056±0.00 N/A N/A N/A N/A N/A
ENST00000464987 N/A N/A N/A N/A N/A N/A 0.212±0.00 N/A N/A 0.392±0.00 N/A N/A N/A N/A
ENST00000468468 N/A N/A N/A N/A N/A 0.232±0.00 N/A N/A N/A N/A N/A 0.364±0.26 N/A N/A
ENST00000494815 N/A N/A 0.165±0.00 0.338±0.00 N/A N/A N/A N/A N/A N/A N/A 0.072±0.00 N/A 1.211±0.00
ENST00000524895 N/A N/A 1.463±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525201 N/A N/A 0.952±0.00 0.392±0.00 0.782±0.00 N/A N/A 0.912±0.00 N/A 1.807±0.00 N/A N/A 24.929±0.00 N/A
ENST00000525334 N/A N/A N/A N/A 1.610±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526055 N/A N/A N/A 1.344±0.70 N/A N/A N/A 3.169±0.00 3.734±0.00 N/A N/A N/A N/A N/A
ENST00000527644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.973±0.00 N/A 4.758±0.00
ENST00000529566 N/A N/A 0.842±0.00 0.630±0.00 N/A N/A 1.692±0.00 N/A 2.202±0.00 1.757±0.00 N/A 1.122±0.00 N/A N/A
ENST00000532375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.764±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003EQ CIL_0003EQ_0001 CGP 11:837356-867116
CIL_0003ER CIL_0003ER_0001 CGP 11:842808-915058

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003823 IDA antigen binding
GO:0005178 IPI integrin binding
GO:0005515 IEA protein binding
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0006461 IDA protein complex assembly
GO:0016021 IEA integral component of membrane
GO:0031982 IDA vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089354 tspan4a tetraspanin 4a protein_coding Danio_rerio
ENSMUSG00000025511 Tspan4 tetraspanin 4 protein_coding Mus_musculus

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