C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetraspanin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025511 Tspan4 10090 + 7:141475240-141493427 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026585 Tspan4-001 141475240-141493427 protein_coding
  ENSMUST00000117634 Tspan4-002 141476400-141493421 protein_coding
  ENSMUST00000130402 Tspan4-006 141491489-141492960 retained_intron
  ENSMUST00000138092 Tspan4-003 141475510-141491803 protein_coding
  ENSMUST00000140858 Tspan4-005 141475736-141489620 protein_coding
  ENSMUST00000146305 Tspan4-004 141475513-141491816 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000026585ENSMUST00000117634ENSMUST00000138092
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000026585 33.124±3.78 71.574±6.17 26.200±0.00 5.138±0.50 38.640±6.90 7.180±0.86 8.638±2.03 24.359±4.67 22.760±3.99 24.598±11.80 1.979±0.11 114.336±42.70 26.356±0.01
ENSMUST00000117634 35.927±13.47 48.776±12.06 33.035±2.82 9.282±2.94 28.280±11.15 10.258±1.27 16.826±3.77 31.385±6.12 14.804±2.08 30.798±11.01 4.507±1.48 46.530±18.74 N/A
ENSMUST00000138092 N/A 79.802±17.22 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003EQ CIL_0003EQ_0002 CGP 7:141471860-141493427
CIL_0003ER CIL_0003ER_0002 CGP 7:141475240-141539857

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003823 IEA antigen binding
GO:0005178 IEA integrin binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0006461 IEA protein complex assembly
GO:0016021 IEA integral component of membrane
GO:0031982 IEA vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089354 tspan4a tetraspanin 4a protein_coding Danio_rerio
ENSG00000214063 TSPAN4 tetraspanin 4 protein_coding Homo_sapiens

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