C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397397 TSPAN4-001 ENSG00000214063 9606 + 11:842808-867111 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000397397
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000397397 23.177±0.00 35.934±0.00 1.432±0.00 20.176±0.00 11.199±10.86 10.219±0.00 24.354±0.00 6.554±0.00 15.042±13.45 37.337±0.00 42.071±2.34 31.057±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003EQ CIL_0003EQ_0001 CGP 11:837356-867116
CIL_0003ER CIL_0003ER_0001 CGP 11:842808-915058

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003823 IDA antigen binding
GO:0005178 IPI integrin binding
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0006461 IDA protein complex assembly
GO:0016021 IEA integral component of membrane
GO:0031982 IDA vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117634 Tspan4-002 protein_coding Mus_musculus 0 869
ENSMUST00000026585 Tspan4-001 protein_coding Mus_musculus 0 869
ENSMUST00000146305 Tspan4-004 protein_coding Mus_musculus 0 584
ENSMUST00000138092 Tspan4-003 protein_coding Mus_musculus 0 573
ENSMUST00000140858 Tspan4-005 protein_coding Mus_musculus 0 202

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