C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytoplasmic polyadenylation element binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000214575 CPEB1 9606 - 15:82543201-82648861 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000563519 CPEB1-014 82633182-82648378 processed_transcript
  ENST00000566716 CPEB1-013 82627289-82648861 processed_transcript
  ENST00000567678 CPEB1-015 82571446-82647503 protein_coding
  ENST00000568994 CPEB1-017 82557799-82572078 protein_coding
  ENST00000569257 CPEB1-016 82571391-82647123 protein_coding
  ENST00000570205 CPEB1-018 82557522-82571447 retained_intron
  ENST00000611031 CPEB1-201 82543204-82628152 protein_coding
  ENST00000611163 CPEB1-010 82544295-82571759 protein_coding
  ENST00000614918 CPEB1-004 82543203-82630185 protein_coding
  ENST00000614977 CPEB1-009 82544453-82571784 nonsense_mediated_decay
  ENST00000615198 CPEB1-001 82544273-82647977 protein_coding
  ENST00000616959 CPEB1-007 82544295-82573211 protein_coding
  ENST00000617462 CPEB1-011 82544297-82571809 protein_coding
  ENST00000617522 CPEB1-003 82544358-82647359 protein_coding
  ENST00000617958 CPEB1-006 82543834-82628469 protein_coding
  ENST00000618449 CPEB1-008 82543834-82571823 protein_coding
  ENST00000618698 CPEB1-012 82543201-82556536 retained_intron
  ENST00000620182 CPEB1-002 82544310-82647605 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENST00000611031
Transcript ID Brain Testis
ENST00000611031 7.499±0.00 20.313±2.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GR CIL_0006GR_0001 CGP 15:82543201-82709914

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000900 ISS translation repressor activity, nucleic acid binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006397 IEA mRNA processing
GO:0006417 IEA regulation of translation
GO:0007130 IEA synaptonemal complex assembly
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0030529 IEA ribonucleoprotein complex
GO:0032869 IDA cellular response to insulin stimulus
GO:0035925 ISS mRNA 3'-UTR AU-rich region binding
GO:0042995 IEA cell projection
GO:0045211 IEA postsynaptic membrane
GO:0046872 IEA metal ion binding
GO:0048168 IEA regulation of neuronal synaptic plasticity
GO:0071230 ISS cellular response to amino acid stimulus
GO:0071456 IDA cellular response to hypoxia
GO:0072687 IEA meiotic spindle
GO:2000766 IMP negative regulation of cytoplasmic translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008454 cpeb1b cytoplasmic polyadenylation element binding protein 1b protein_coding Danio_rerio
ENSDARG00000045932 cpeb1a cytoplasmic polyadenylation element binding protein 1a protein_coding Danio_rerio
ENSDARG00000053117 cpeb1a Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000025586 Cpeb1 cytoplasmic polyadenylation element binding protein 1 protein_coding Mus_musculus

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