C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytoplasmic polyadenylation element binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025586 Cpeb1 10090 - 7:81347026-81455465 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000098331 Cpeb1-001 81347026-81454758 protein_coding
  ENSMUST00000124937 Cpeb1-004 81436224-81455392 processed_transcript
  ENSMUST00000130310 Cpeb1-002 81347028-81436377 protein_coding
  ENSMUST00000135177 Cpeb1-003 81361586-81455465 processed_transcript
  ENSMUST00000136689 Cpeb1-008 81349602-81355995 processed_transcript
  ENSMUST00000151661 Cpeb1-005 81361750-81372485 processed_transcript
  ENSMUST00000152319 Cpeb1-007 81349321-81350510 retained_intron
  ENSMUST00000153419 Cpeb1-006 81361586-81372441 retained_intron
  ENSMUST00000178892 Cpeb1-201 81347029-81454758 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000098331ENSMUST00000130310ENSMUST00000135177ENSMUST00000136689ENSMUST00000152319ENSMUST00000178892
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000098331 N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.21 N/A 2.481±1.31 N/A N/A
ENSMUST00000130310 5.723±1.29 3.167±0.71 N/A 1.966±1.80 3.918±0.05 0.898±0.30 1.864±0.67 2.078±1.13 0.264±0.33 8.045±0.79 3.303±1.19 1.013±0.67 2.573±1.13
ENSMUST00000135177 3.892±0.00 4.519±0.00 N/A N/A 3.535±0.40 0.459±0.00 4.423±0.00 2.042±0.00 0.019±0.00 N/A N/A N/A N/A
ENSMUST00000136689 N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A
ENSMUST00000152319 N/A N/A N/A 8.219±7.07 N/A N/A N/A N/A N/A N/A 4.534±0.00 0.496±0.13 N/A
ENSMUST00000178892 N/A 1.308±0.00 1.978±0.00 2.225±0.00 1.027±0.01 N/A N/A N/A 0.034±0.04 N/A 1.111±0.50 0.070±0.00 0.590±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GR CIL_0006GR_0002 CGP 7:81347026-81493925

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000900 IDA translation repressor activity, nucleic acid binding
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0006417 IDA regulation of translation
GO:0007130 IMP synaptonemal complex assembly
GO:0016020 IDA membrane
GO:0030054 IEA cell junction
GO:0030529 IEA ribonucleoprotein complex
GO:0032869 ISS cellular response to insulin stimulus
GO:0035925 IDA mRNA 3'-UTR AU-rich region binding
GO:0045211 IEA postsynaptic membrane
GO:0046872 IEA metal ion binding
GO:0048168 IMP regulation of neuronal synaptic plasticity
GO:0071230 IDA cellular response to amino acid stimulus
GO:0071456 IDA cellular response to hypoxia
GO:0072687 IDA meiotic spindle
GO:2000766 IDA negative regulation of cytoplasmic translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008454 cpeb1b cytoplasmic polyadenylation element binding protein 1b protein_coding Danio_rerio
ENSDARG00000045932 cpeb1a cytoplasmic polyadenylation element binding protein 1a protein_coding Danio_rerio
ENSDARG00000053117 cpeb1a Uncharacterized protein protein_coding Danio_rerio
ENSG00000214575 CPEB1 cytoplasmic polyadenylation element binding protein 1 protein_coding Homo_sapiens

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