C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic polyadenylation element binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000618449 CPEB1-008 ENSG00000214575 9606 - 15:82543834-82571823 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GR CIL_0006GR_0001 CGP 15:82543201-82709914

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000900 ISS translation repressor activity, nucleic acid binding
GO:0003676 IEA nucleic acid binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006397 IEA mRNA processing
GO:0030054 IEA cell junction
GO:0030529 IEA ribonucleoprotein complex
GO:0032869 IDA cellular response to insulin stimulus
GO:0035925 ISS mRNA 3'-UTR AU-rich region binding
GO:0042995 IEA cell projection
GO:0045211 IEA postsynaptic membrane
GO:0046872 IEA metal ion binding
GO:0071230 ISS cellular response to amino acid stimulus
GO:0071456 IDA cellular response to hypoxia
GO:2000766 IMP negative regulation of cytoplasmic translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178892 Cpeb1-201 protein_coding Mus_musculus 0 2896
ENSMUST00000098331 Cpeb1-001 protein_coding Mus_musculus 0 2896
ENSMUST00000130310 Cpeb1-002 protein_coding Mus_musculus 0 2800
ENSMUST00000153419 Cpeb1-006 retained_intron Mus_musculus 0 638
ENSMUST00000135177 Cpeb1-003 processed_transcript Mus_musculus 0 638
ENSMUST00000136689 Cpeb1-008 processed_transcript Mus_musculus 0 582
ENSMUST00000151661 Cpeb1-005 processed_transcript Mus_musculus 0 388
ENSMUST00000152319 Cpeb1-007 retained_intron Mus_musculus 0 265

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