C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein 407
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000215421 ZNF407 9606 + 18:74597870-75065671 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299687 ZNF407-001 74631020-75065669 protein_coding
  ENST00000309902 ZNF407-201 74630963-74804624 protein_coding
  ENST00000577538 ZNF407-006 74631020-74921058 protein_coding
  ENST00000579200 ZNF407-003 75061282-75065671 retained_intron
  ENST00000581829 ZNF407-005 74877205-74898443 protein_coding
  ENST00000582214 ZNF407-007 75060155-75063485 processed_transcript
  ENST00000582337 ZNF407-002 74597870-74804627 protein_coding
  ENST00000584235 ZNF407-004 74877198-74905938 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299687ENST00000309902ENST00000577538ENST00000582337
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299687 0.639±0.00 0.432±0.00 1.321±0.42 0.464±0.05 0.793±0.35 0.521±0.18 0.864±0.00 0.449±0.00 0.719±0.26 1.334±0.00 0.610±0.19 0.386±0.19 1.476±0.78
ENST00000309902 N/A N/A 0.340±0.00 0.714±0.00 0.938±0.00 N/A N/A 1.776±0.00 N/A N/A 1.325±0.00 N/A N/A
ENST00000577538 N/A N/A N/A N/A 3.242±0.00 0.600±0.00 N/A 1.326±0.00 N/A N/A 0.714±0.00 N/A N/A
ENST00000582337 N/A N/A N/A N/A N/A N/A N/A N/A 2.620±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008E6 CIL_0008E6_0001 VISTA 18:74345519-74946377
CIL_0008E7 CIL_0008E7_0001 VISTA 18:74350564-74952254
CIL_0008CN CIL_0008CN_0001 VISTA 18:74434936-75037805
CIL_0008EA CIL_0008EA_0001 VISTA 18:74496006-75098339
CIL_00088P CIL_00088P_0001 VISTA 18:74555716-75157326

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000048410 Zfp407 zinc finger protein 407 protein_coding Mus_musculus

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