C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 407
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000299687 ZNF407-001 ENSG00000215421 9606 + 18:74631020-75065669 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299687
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299687 0.639±0.00 0.432±0.00 1.321±0.42 0.464±0.05 0.793±0.35 0.521±0.18 0.864±0.00 0.449±0.00 0.719±0.26 1.334±0.00 0.610±0.19 0.386±0.19 1.476±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008E6 CIL_0008E6_0001 VISTA 18:74345519-74946377
CIL_0008E7 CIL_0008E7_0001 VISTA 18:74350564-74952254
CIL_0008CN CIL_0008CN_0001 VISTA 18:74434936-75037805
CIL_0008EA CIL_0008EA_0001 VISTA 18:74496006-75098339
CIL_00088P CIL_00088P_0001 VISTA 18:74555716-75157326

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125763 Zfp407-001 protein_coding Mus_musculus 0 2645
ENSMUST00000143597 Zfp407-002 processed_transcript Mus_musculus 0 664
ENSMUST00000125450 Zfp407-003 protein_coding Mus_musculus 0 337
ENSMUST00000156181 Zfp407-004 processed_transcript Mus_musculus 0 259
ENSMUST00000182297 Zfp407-005 processed_transcript Mus_musculus 6e-33 148
ENSMUST00000020628 Zfp354a-201 protein_coding Mus_musculus 0.00004 57
ENSMUST00000109119 Zfp354a-002 protein_coding Mus_musculus 0.00004 57
ENSMUST00000109122 Zfp354a-004 protein_coding Mus_musculus 0.00004 57
ENSMUST00000102766 Zfp354a-001 protein_coding Mus_musculus 0.00004 57
ENSMUST00000164280 Zfp354b-201 protein_coding Mus_musculus 0.00004 57
ENSMUST00000109124 Zfp354b-001 protein_coding Mus_musculus 0.00004 57

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