C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA, U4 small nuclear 78, pseudogene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000222872 RNU4-78P 9606 + 3:42221840-42221965 snRNA
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000410940 RNU4-78P-201 42221840-42221965 snRNA

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartPlacentaTestisENST00000410940
Transcript ID Adipose Adrenal Brain Breast Colon Heart Placenta Testis
ENST00000410940 0.507±0.00 0.162±0.00 0.513±0.00 0.317±0.00 0.299±0.00 0.321±0.00 1.606±0.00 0.151±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000484 CIL_000484_0001 CGP 3:41246599-42225889
CIL_0007RR CIL_0007RR_0001 VISTA 3:41771738-42373225
CIL_000483 CIL_000483_0001 CGP 3:42013802-42266207

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000080065 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000080132 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000080305 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000080327 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000080363 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000080503 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000080634 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000080945 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000081131 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000081432 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000081437 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000081552 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000081970 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000082013 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000082424 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000082452 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000082529 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000082576 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000082899 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000082995 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000083128 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000083166 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000083303 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000083509 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000083635 U4 U4 spliceosomal RNA snRNA Danio_rerio
ENSDARG00000084571 U4 U4 spliceosomal RNA snRNA Danio_rerio

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