C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000484_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168038-ENSG00000182606 CGP 9606 3:41246599-42225889
GeneTranscriptPositionBiotype
ENSG00000168036 (CTNNB1)
catenin (cadherin-associated protein), beta 1, 88kDa 		ENST00000349496 (CTNNB1-001) 41199439-41240453 protein_coding
ENST00000396183 (CTNNB1-003) 41199434-41240443 protein_coding
ENST00000396185 (CTNNB1-002) 41199505-41240443 protein_coding
ENST00000405570 (CTNNB1-007) 41194910-41239353 protein_coding
ENST00000426215 (CTNNB1-010) 41194837-41224711 protein_coding
ENST00000431914 (CTNNB1-012) 41198645-41225161 protein_coding
ENST00000433400 (CTNNB1-011) 41195198-41224551 protein_coding
ENST00000441708 (CTNNB1-014) 41222086-41225012 protein_coding
ENST00000450969 (CTNNB1-013) 41200111-41225038 protein_coding
ENST00000453024 (CTNNB1-005) 41199445-41239736 protein_coding
ENST00000465552 (CTNNB1-016) 41234154-41236962 retained_intron
ENST00000471014 (CTNNB1-017) 41239133-41260096 processed_transcript
ENST00000482042 (CTNNB1-004) 41235597-41237467 retained_intron
ENST00000485265 (CTNNB1-006) 41235791-41237218 retained_intron
ENST00000488914 (CTNNB1-015) 41224427-41225556 retained_intron
ENSG00000168038 (ULK4)
unc-51 like kinase 4 		ENST00000301831 (ULK4-001) 41246607-41962430 protein_coding
ENST00000414606 (ULK4-006) 41937095-41962130 protein_coding
ENST00000420927 (ULK4-002) 41882150-41961994 protein_coding
ENST00000431379 (ULK4-008) 41935895-41962102 nonsense_mediated_decay
ENST00000453224 (ULK4-007) 41935862-41962115 nonsense_mediated_decay
ENST00000459802 (ULK4-004) 41919720-41962077 processed_transcript
ENST00000460406 (ULK4-012) 41800133-41854911 processed_transcript
ENST00000460978 (ULK4-005) 41937859-41962055 retained_intron
ENST00000481226 (ULK4-010) 41907920-41915474 processed_transcript
ENST00000484323 (ULK4-011) 41911552-41913204 retained_intron
ENST00000489118 (ULK4-003) 41246599-41278151 processed_transcript
ENST00000497684 (ULK4-009) 41931751-41954798 retained_intron
ENSG00000182606 (TRAK1)
trafficking protein, kinesin binding 1 		ENST00000327628 (TRAK1-004) 42091070-42225768 protein_coding
ENST00000341421 (TRAK1-002) 42160169-42212623 protein_coding
ENST00000396175 (TRAK1-001) 42160169-42225889 protein_coding
ENST00000418790 (TRAK1-009) 42149359-42184757 nonsense_mediated_decay
ENST00000427771 (TRAK1-007) 42193077-42202754 protein_coding
ENST00000449246 (TRAK1-003) 42149235-42204189 protein_coding
ENST00000469506 (TRAK1-008) 42160212-42184923 processed_transcript
ENST00000484786 (TRAK1-005) 42087200-42202906 processed_transcript
ENST00000487159 (TRAK1-006) 42013802-42225889 processed_transcript
ENST00000613405 (TRAK1-201) 42149235-42212615 protein_coding
ENSG00000222872 (RNU4-78P)
RNA, U4 small nuclear 78, pseudogene 		ENST00000410940 (RNU4-78P-201) 42221840-42221965 snRNA
ENSG00000222942 (RN7SKP58)
RNA, 7SK small nuclear pseudogene 58 		ENST00000411010 (RN7SKP58-201) 41766615-41766919 misc_RNA
ENSG00000223513 (ATP6V0E1P2)
ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 pseudogene 2 		ENST00000441771 (ATP6V0E1P2-001) 41859350-41859594 processed_pseudogene
ENSG00000229339 (RP11-193I22.2)
 ENST00000434712 (RP11-193I22.2-001) 42051181-42051694 processed_pseudogene
ENSG00000234270 (RPL36P20)
ribosomal protein L36 pseudogene 20 		ENST00000423702 (RPL36P20-001) 41955445-41955763 processed_pseudogene
ENSG00000234562 (TPMTP2)
thiopurine S-methyltransferase pseudogene 2 		ENST00000414372 (TPMTP2-001) 42145646-42146371 processed_pseudogene
ENSG00000235339 (GEMIN2P2)
gem (nuclear organelle) associated protein 2 pseudogene 2 		ENST00000418195 (GEMIN2P2-001) 41977008-41978034 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_000484_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040936-ENSMUSG00000032536 CGP 10090 9:120960268-121474916
GeneTranscriptPositionBiotype
ENSMUSG00000006932 (Ctnnb1)
catenin (cadherin associated protein), beta 1 		ENSMUST00000007130 (Ctnnb1-001) 120933400-120960507 protein_coding
ENSMUST00000126633 (Ctnnb1-007) 120955125-120955841 processed_transcript
ENSMUST00000130466 (Ctnnb1-004) 120929216-120950635 protein_coding
ENSMUST00000130845 (Ctnnb1-012) 120933623-120951710 nonsense_mediated_decay
ENSMUST00000133689 (Ctnnb1-009) 120955914-120959025 protein_coding
ENSMUST00000139138 (Ctnnb1-008) 120956867-120957824 retained_intron
ENSMUST00000145093 (Ctnnb1-006) 120933818-120951293 protein_coding
ENSMUST00000154356 (Ctnnb1-002) 120933475-120960506 nonsense_mediated_decay
ENSMUST00000154687 (Ctnnb1-003) 120933486-120956447 retained_intron
ENSMUST00000156911 (Ctnnb1-010) 120955297-120957639 processed_transcript
ENSMUST00000163844 (Ctnnb1-011) 120950221-120959517 nonsense_mediated_decay
ENSMUST00000169931 (Ctnnb1-005) 120955457-120957534 protein_coding
ENSMUST00000170729 (Ctnnb1-013) 120951089-120955399 nonsense_mediated_decay
ENSMUST00000178812 (Ctnnb1-201) 120933578-120960506 protein_coding
ENSMUSG00000032536 (Trak1)
trafficking protein, kinesin binding 1 		ENSMUST00000045903 (Trak1-201) 121366958-121474916 protein_coding
ENSMUSG00000040936 (Ulk4)
unc-51-like kinase 4 		ENSMUST00000051479 (Ulk4-005) 121073671-121277172 protein_coding
ENSMUST00000051565 (Ulk4-002) 121073667-121277181 nonsense_mediated_decay
ENSMUST00000164336 (Ulk4-003) 121102544-121277197 retained_intron
ENSMUST00000164969 (Ulk4-008) 121160376-121193057 processed_transcript
ENSMUST00000169176 (Ulk4-009) 120964454-121044932 retained_intron
ENSMUST00000170237 (Ulk4-006) 121156851-121257408 nonsense_mediated_decay
ENSMUST00000170406 (Ulk4-004) 120960268-121108525 processed_transcript
ENSMUST00000171061 (Ulk4-007) 120966404-121277170 nonsense_mediated_decay
ENSMUST00000171923 (Ulk4-001) 120964454-121277197 protein_coding
ENSMUSG00000084706 (Gm22987)
predicted gene, 22987 		ENSMUST00000122757 (Gm22987-201) 121242342-121242587 misc_RNA
ENSMUSG00000091336 (Gm17157)
predicted gene 17157 		ENSMUST00000172397 (Gm17157-001) 121247317-121247664 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000484_0001ENSG00000168036ENST00000349496ENST00000396183ENST00000396185ENST00000405570ENST00000426215ENST00000431914ENST00000433400ENST00000441708ENST00000450969ENST00000453024ENST00000465552ENST00000471014ENST00000482042ENST00000485265ENST00000488914ENSG00000168038ENST00000301831ENST00000414606ENST00000420927ENST00000431379ENST00000453224ENST00000459802ENST00000460406ENST00000460978ENST00000481226ENST00000484323ENST00000489118ENST00000497684ENSG00000182606ENST00000327628ENST00000341421ENST00000396175ENST00000418790ENST00000427771ENST00000449246ENST00000469506ENST00000484786ENST00000487159ENST00000613405ENSG00000222872ENST00000410940ENSG00000222942ENST00000411010ENSG00000223513ENST00000441771ENSG00000229339ENST00000434712ENSG00000234270ENST00000423702ENSG00000234562ENST00000414372ENSG00000235339ENST00000418195CIL_000484_0002ENSMUSG00000006932ENSMUST00000007130ENSMUST00000126633ENSMUST00000130466ENSMUST00000130845ENSMUST00000133689ENSMUST00000139138ENSMUST00000145093ENSMUST00000154356ENSMUST00000154687ENSMUST00000156911ENSMUST00000163844ENSMUST00000169931ENSMUST00000170729ENSMUST00000178812ENSMUSG00000032536ENSMUST00000045903ENSMUSG00000040936ENSMUST00000051479ENSMUST00000051565ENSMUST00000164336ENSMUST00000164969ENSMUST00000169176ENSMUST00000170237ENSMUST00000170406ENSMUST00000171061ENSMUST00000171923ENSMUSG00000084706ENSMUST00000122757ENSMUSG00000091336ENSMUST00000172397
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000168036 ENST00000349496 32.558±0.00 34.524±0.00 6.725±0.00 25.244±7.20 27.339±10.45 23.744±9.93 8.874±5.19 24.971±16.92 14.024±0.88 22.281±7.86 4.667±0.00 52.697±18.06 37.343±19.25 23.646±12.70
ENST00000396183 N/A N/A N/A N/A 5.511±0.00 N/A 5.816±2.98 N/A N/A N/A 3.638±1.79 16.150±4.84 10.682±1.29 N/A
ENST00000396185 25.977±0.00 23.070±0.00 7.754±0.00 17.313±2.99 19.033±1.75 16.268±0.10 10.934±5.22 18.390±0.35 13.779±3.69 28.294±8.68 5.665±1.24 32.041±2.88 29.198±10.15 18.417±5.83
ENST00000405570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.805±0.00 N/A N/A N/A
ENST00000426215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.201±0.00
ENST00000465552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168038 ENST00000301831 N/A N/A N/A N/A 0.396±0.11 N/A 0.111±0.01 N/A 0.719±0.00 N/A N/A 0.537±0.45 0.380±0.00 9.333±6.07
ENST00000414606 N/A 1.557±0.00 N/A N/A N/A N/A N/A N/A 0.250±0.00 N/A N/A N/A N/A N/A
ENST00000420927 N/A N/A N/A N/A 1.672±0.00 N/A N/A N/A 0.094±0.00 N/A 0.056±0.00 N/A 0.689±0.00 2.218±0.00
ENST00000431379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.295±1.36 N/A N/A
ENST00000453224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459802 N/A 1.043±0.00 N/A N/A 4.416±0.00 3.513±0.00 1.132±0.00 0.590±0.00 N/A 9.454±0.00 0.104±0.00 N/A N/A N/A
ENST00000460406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460978 N/A N/A N/A N/A N/A N/A N/A 1.981±0.00 N/A N/A N/A N/A N/A N/A
ENST00000481226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000182606 ENST00000327628 N/A N/A N/A 5.187±1.85 N/A 1.514±0.00 N/A N/A N/A 2.065±0.00 N/A 1.259±0.00 N/A 1.684±0.00
ENST00000341421 N/A 3.812±0.00 N/A N/A 3.843±0.20 4.452±0.00 N/A 1.378±0.00 3.669±0.00 2.966±1.68 N/A 3.825±2.37 3.946±1.11 2.743±0.12
ENST00000396175 N/A N/A 2.070±0.00 N/A N/A 1.195±0.00 N/A 2.392±0.00 N/A N/A N/A 2.866±0.00 N/A 1.235±0.00
ENST00000418790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449246 N/A N/A N/A N/A N/A N/A 3.670±0.00 N/A N/A N/A 15.408±2.55 N/A N/A N/A
ENST00000469506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484786 N/A N/A 7.562±0.00 4.508±0.00 4.737±0.00 8.422±0.00 11.700±0.00 0.708±0.00 7.988±0.00 2.677±0.00 26.816±5.00 2.668±0.00 N/A N/A
ENST00000487159 5.940±0.00 9.616±0.00 N/A 6.970±0.00 10.471±0.00 2.378±0.10 10.296±0.00 5.176±0.00 1.235±0.61 8.997±0.00 3.603±0.00 4.914±1.52 4.071±1.08 4.230±1.17
ENST00000613405 N/A N/A N/A N/A N/A N/A N/A 1.393±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000222872 ENST00000410940 0.507±0.00 0.162±0.00 N/A 0.513±0.00 0.317±0.00 0.299±0.00 0.321±0.00 N/A N/A N/A N/A N/A 1.606±0.00 0.151±0.00
ENSG00000222942 ENST00000411010 0.243±0.00 N/A 4.598±0.00 N/A 0.890±0.00 N/A N/A N/A 0.824±0.00 0.479±0.00 N/A N/A N/A N/A
ENSG00000223513 ENST00000441771 N/A 0.279±0.00 N/A N/A 0.424±0.00 0.064±0.00 N/A 0.068±0.00 0.178±0.00 0.352±0.00 N/A 1.008±0.00 N/A N/A
ENSG00000229339 ENST00000434712 N/A 0.065±0.00 N/A 0.195±0.00 N/A N/A 0.127±0.00 0.120±0.00 N/A N/A N/A 1.147±0.00 N/A N/A
ENSG00000234270 ENST00000423702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.724±0.00
ENSG00000234562 ENST00000414372 0.058±0.00 0.088±0.00 N/A 0.400±0.00 N/A N/A N/A 0.113±0.00 N/A 0.113±0.00 N/A N/A N/A N/A
ENSG00000235339 ENST00000418195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006932 ENSMUST00000007130 61.032±33.28 50.190±20.62 55.437±18.60 74.258±18.78 13.064±3.57 61.663±7.03 37.245±5.30 51.358±9.23 24.958±10.01 87.499±22.20 15.612±4.69 22.465±8.15 52.545±31.67 18.795±0.00
ENSMUST00000126633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154356 N/A 19.733±4.29 N/A N/A 8.346±2.55 19.194±5.39 N/A 15.096±0.00 4.291±1.37 20.330±1.61 N/A 15.441±7.65 N/A N/A
ENSMUST00000154687 N/A 90.317±39.37 N/A N/A 9.014±3.90 25.027±13.10 N/A N/A N/A 24.818±3.97 N/A 25.970±5.12 N/A N/A
ENSMUST00000156911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178812 N/A N/A 20.547±0.00 26.554±0.00 12.953±0.00 N/A N/A N/A N/A N/A 41.785±4.58 203.908±0.00 89.374±51.57 9.164±0.00
ENSMUSG00000032536 ENSMUST00000045903 19.915±4.13 11.662±0.00 13.525±1.17 11.721±2.34 18.572±0.42 45.752±1.78 16.237±0.80 11.434±4.27 5.449±2.70 17.132±0.41 12.730±0.78 8.986±2.26 5.187±0.59 6.201±0.66
ENSMUSG00000040936 ENSMUST00000051479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.021±0.00
ENSMUST00000051565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.132±0.24 N/A 76.398±34.95
ENSMUSG00000084706 ENSMUST00000122757 N/A N/A N/A 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.402±0.00
ENSMUSG00000091336 ENSMUST00000172397 N/A N/A N/A 0.127±0.00 N/A N/A N/A N/A N/A N/A N/A 0.158±0.00 N/A 0.317±0.13

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