C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007RR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2359 VISTA 9606 3:41771738-42373225
GeneTranscriptPositionBiotype
ENSG00000168038 (ULK4)
unc-51 like kinase 4 		ENST00000301831 (ULK4-001) 41246607-41962430 protein_coding
ENST00000414606 (ULK4-006) 41937095-41962130 protein_coding
ENST00000420927 (ULK4-002) 41882150-41961994 protein_coding
ENST00000431379 (ULK4-008) 41935895-41962102 nonsense_mediated_decay
ENST00000453224 (ULK4-007) 41935862-41962115 nonsense_mediated_decay
ENST00000459802 (ULK4-004) 41919720-41962077 processed_transcript
ENST00000460406 (ULK4-012) 41800133-41854911 processed_transcript
ENST00000460978 (ULK4-005) 41937859-41962055 retained_intron
ENST00000481226 (ULK4-010) 41907920-41915474 processed_transcript
ENST00000484323 (ULK4-011) 41911552-41913204 retained_intron
ENST00000489118 (ULK4-003) 41246599-41278151 processed_transcript
ENST00000497684 (ULK4-009) 41931751-41954798 retained_intron
ENSG00000182606 (TRAK1)
trafficking protein, kinesin binding 1 		ENST00000327628 (TRAK1-004) 42091070-42225768 protein_coding
ENST00000341421 (TRAK1-002) 42160169-42212623 protein_coding
ENST00000396175 (TRAK1-001) 42160169-42225889 protein_coding
ENST00000418790 (TRAK1-009) 42149359-42184757 nonsense_mediated_decay
ENST00000427771 (TRAK1-007) 42193077-42202754 protein_coding
ENST00000449246 (TRAK1-003) 42149235-42204189 protein_coding
ENST00000469506 (TRAK1-008) 42160212-42184923 processed_transcript
ENST00000484786 (TRAK1-005) 42087200-42202906 processed_transcript
ENST00000487159 (TRAK1-006) 42013802-42225889 processed_transcript
ENST00000613405 (TRAK1-201) 42149235-42212615 protein_coding
ENSG00000187094 (CCK)
cholecystokinin 		ENST00000334681 (CCK-001) 42257825-42264903 protein_coding
ENST00000396169 (CCK-002) 42257825-42266207 protein_coding
ENST00000434608 (CCK-003) 42257826-42263947 protein_coding
ENST00000484359 (CCK-004) 42262984-42264765 retained_intron
ENSG00000222872 (RNU4-78P)
RNA, U4 small nuclear 78, pseudogene 		ENST00000410940 (RNU4-78P-201) 42221840-42221965 snRNA
ENSG00000223513 (ATP6V0E1P2)
ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 pseudogene 2 		ENST00000441771 (ATP6V0E1P2-001) 41859350-41859594 processed_pseudogene
ENSG00000229339 (RP11-193I22.2)
 ENST00000434712 (RP11-193I22.2-001) 42051181-42051694 processed_pseudogene
ENSG00000229572 (EIF4BP4)
eukaryotic translation initiation factor 4B pseudogene 4 		ENST00000441847 (EIF4BP4-001) 42340588-42342367 processed_pseudogene
ENSG00000231280 (SALL4P6)
spalt-like transcription factor 4 pseudogene 6 		ENST00000429385 (SALL4P6-001) 42321005-42322695 processed_pseudogene
ENSG00000234270 (RPL36P20)
ribosomal protein L36 pseudogene 20 		ENST00000423702 (RPL36P20-001) 41955445-41955763 processed_pseudogene
ENSG00000234562 (TPMTP2)
thiopurine S-methyltransferase pseudogene 2 		ENST00000414372 (TPMTP2-001) 42145646-42146371 processed_pseudogene
ENSG00000235339 (GEMIN2P2)
gem (nuclear organelle) associated protein 2 pseudogene 2 		ENST00000418195 (GEMIN2P2-001) 41977008-41978034 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0007RR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2359 VISTA 10090 9:121055298-121657466
GeneTranscriptPositionBiotype
ENSMUSG00000032528 (Vipr1)
vasoactive intestinal peptide receptor 1 		ENSMUST00000035115 (Vipr1-001) 121642716-121672954 protein_coding
ENSMUST00000129394 (Vipr1-003) 121664615-121665907 retained_intron
ENSMUST00000139189 (Vipr1-002) 121643051-121660225 processed_transcript
ENSMUST00000149959 (Vipr1-004) 121668713-121669509 retained_intron
ENSMUSG00000032530 (Lyzl4)
lysozyme-like 4 		ENSMUST00000077706 (Lyzl4-002) 121577843-121641566 protein_coding
ENSMUST00000120918 (Lyzl4-001) 121577849-121642096 protein_coding
ENSMUST00000125075 (Lyzl4-003) 121584087-121641526 protein_coding
ENSMUSG00000032532 (Cck)
cholecystokinin 		ENSMUST00000035120 (Cck-201) 121489825-121495689 protein_coding
ENSMUSG00000032536 (Trak1)
trafficking protein, kinesin binding 1 		ENSMUST00000045903 (Trak1-201) 121366958-121474916 protein_coding
ENSMUSG00000040936 (Ulk4)
unc-51-like kinase 4 		ENSMUST00000051479 (Ulk4-005) 121073671-121277172 protein_coding
ENSMUST00000051565 (Ulk4-002) 121073667-121277181 nonsense_mediated_decay
ENSMUST00000164336 (Ulk4-003) 121102544-121277197 retained_intron
ENSMUST00000164969 (Ulk4-008) 121160376-121193057 processed_transcript
ENSMUST00000169176 (Ulk4-009) 120964454-121044932 retained_intron
ENSMUST00000170237 (Ulk4-006) 121156851-121257408 nonsense_mediated_decay
ENSMUST00000170406 (Ulk4-004) 120960268-121108525 processed_transcript
ENSMUST00000171061 (Ulk4-007) 120966404-121277170 nonsense_mediated_decay
ENSMUST00000171923 (Ulk4-001) 120964454-121277197 protein_coding
ENSMUSG00000084706 (Gm22987)
predicted gene, 22987 		ENSMUST00000122757 (Gm22987-201) 121242342-121242587 misc_RNA
ENSMUSG00000084995 (Lyzl4os)
lysozyme-like 4, opposite strand 		ENSMUST00000128080 (Lyzl4os-001) 121586997-121603981 antisense
ENSMUST00000156364 (Lyzl4os-002) 121587020-121614255 antisense
ENSMUSG00000091336 (Gm17157)
predicted gene 17157 		ENSMUST00000172397 (Gm17157-001) 121247317-121247664 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007RR_0001ENSG00000168038ENST00000301831ENST00000414606ENST00000420927ENST00000431379ENST00000453224ENST00000459802ENST00000460406ENST00000460978ENST00000481226ENST00000484323ENST00000489118ENST00000497684ENSG00000182606ENST00000327628ENST00000341421ENST00000396175ENST00000418790ENST00000427771ENST00000449246ENST00000469506ENST00000484786ENST00000487159ENST00000613405ENSG00000187094ENST00000334681ENST00000396169ENST00000434608ENST00000484359ENSG00000222872ENST00000410940ENSG00000223513ENST00000441771ENSG00000229339ENST00000434712ENSG00000229572ENST00000441847ENSG00000231280ENST00000429385ENSG00000234270ENST00000423702ENSG00000234562ENST00000414372ENSG00000235339ENST00000418195CIL_0007RR_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007RR_0001ENSG00000168038ENST00000301831ENST00000414606ENST00000420927ENST00000431379ENST00000459802ENST00000460978ENSG00000182606ENST00000327628ENST00000341421ENST00000396175ENST00000449246ENST00000484786ENST00000487159ENST00000613405ENSG00000187094ENST00000334681ENST00000396169ENST00000434608ENST00000484359ENSG00000222872ENST00000410940ENSG00000223513ENST00000441771ENSG00000229339ENST00000434712ENSG00000229572ENST00000441847ENSG00000231280ENST00000429385ENSG00000234270ENST00000423702ENSG00000234562ENST00000414372ENSG00000235339ENST00000418195CIL_0007RR_0002ENSMUSG00000032528ENSMUST00000035115ENSMUSG00000032530ENSMUST00000077706ENSMUST00000120918ENSMUST00000125075ENSMUSG00000032532ENSMUST00000035120ENSMUSG00000032536ENSMUST00000045903ENSMUSG00000040936ENSMUST00000051479ENSMUST00000171923ENSMUSG00000084706ENSMUST00000122757ENSMUSG00000084995ENSMUST00000128080ENSMUST00000156364ENSMUSG00000091336ENSMUST00000172397
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000168038 ENST00000301831 N/A N/A N/A N/A 0.396±0.11 N/A 0.111±0.01 N/A 0.719±0.00 N/A N/A 0.537±0.45 0.380±0.00 9.333±6.07
ENST00000414606 N/A 1.557±0.00 N/A N/A N/A N/A N/A N/A 0.250±0.00 N/A N/A N/A N/A N/A
ENST00000420927 N/A N/A N/A N/A 1.672±0.00 N/A N/A N/A 0.094±0.00 N/A 0.056±0.00 N/A 0.689±0.00 2.218±0.00
ENST00000431379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.295±1.36 N/A N/A
ENST00000453224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459802 N/A 1.043±0.00 N/A N/A 4.416±0.00 3.513±0.00 1.132±0.00 0.590±0.00 N/A 9.454±0.00 0.104±0.00 N/A N/A N/A
ENST00000460406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460978 N/A N/A N/A N/A N/A N/A N/A 1.981±0.00 N/A N/A N/A N/A N/A N/A
ENST00000481226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000182606 ENST00000327628 N/A N/A N/A 5.187±1.85 N/A 1.514±0.00 N/A N/A N/A 2.065±0.00 N/A 1.259±0.00 N/A 1.684±0.00
ENST00000341421 N/A 3.812±0.00 N/A N/A 3.843±0.20 4.452±0.00 N/A 1.378±0.00 3.669±0.00 2.966±1.68 N/A 3.825±2.37 3.946±1.11 2.743±0.12
ENST00000396175 N/A N/A 2.070±0.00 N/A N/A 1.195±0.00 N/A 2.392±0.00 N/A N/A N/A 2.866±0.00 N/A 1.235±0.00
ENST00000418790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449246 N/A N/A N/A N/A N/A N/A 3.670±0.00 N/A N/A N/A 15.408±2.55 N/A N/A N/A
ENST00000469506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484786 N/A N/A 7.562±0.00 4.508±0.00 4.737±0.00 8.422±0.00 11.700±0.00 0.708±0.00 7.988±0.00 2.677±0.00 26.816±5.00 2.668±0.00 N/A N/A
ENST00000487159 5.940±0.00 9.616±0.00 N/A 6.970±0.00 10.471±0.00 2.378±0.10 10.296±0.00 5.176±0.00 1.235±0.61 8.997±0.00 3.603±0.00 4.914±1.52 4.071±1.08 4.230±1.17
ENST00000613405 N/A N/A N/A N/A N/A N/A N/A 1.393±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000187094 ENST00000334681 N/A N/A N/A 73.415±13.20 N/A 0.926±0.00 N/A 0.079±0.00 0.184±0.00 3.134±0.00 N/A 0.162±0.00 2.043±0.00 0.326±0.00
ENST00000396169 N/A N/A N/A 6.677±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.208±0.00
ENST00000434608 N/A N/A N/A 31.115±0.00 N/A N/A N/A 0.083±0.00 N/A 0.258±0.00 N/A N/A 1.382±0.80 0.569±0.00
ENST00000484359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00
ENSG00000222872 ENST00000410940 0.507±0.00 0.162±0.00 N/A 0.513±0.00 0.317±0.00 0.299±0.00 0.321±0.00 N/A N/A N/A N/A N/A 1.606±0.00 0.151±0.00
ENSG00000223513 ENST00000441771 N/A 0.279±0.00 N/A N/A 0.424±0.00 0.064±0.00 N/A 0.068±0.00 0.178±0.00 0.352±0.00 N/A 1.008±0.00 N/A N/A
ENSG00000229339 ENST00000434712 N/A 0.065±0.00 N/A 0.195±0.00 N/A N/A 0.127±0.00 0.120±0.00 N/A N/A N/A 1.147±0.00 N/A N/A
ENSG00000229572 ENST00000441847 N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A N/A
ENSG00000231280 ENST00000429385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00
ENSG00000234270 ENST00000423702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.724±0.00
ENSG00000234562 ENST00000414372 0.058±0.00 0.088±0.00 N/A 0.400±0.00 N/A N/A N/A 0.113±0.00 N/A 0.113±0.00 N/A N/A N/A N/A
ENSG00000235339 ENST00000418195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032528 ENSMUST00000035115 0.552±0.14 0.193±0.07 1.002±0.24 0.820±0.97 4.741±1.73 58.038±3.42 0.158±0.04 0.685±0.09 4.196±3.96 0.719±0.30 0.543±0.11 0.816±0.14 0.042±0.01 0.171±0.06
ENSMUST00000129394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032530 ENSMUST00000077706 0.035±0.00 0.079±0.03 0.134±0.00 0.120±0.00 0.369±0.33 N/A 0.051±0.00 0.034±0.00 N/A 0.107±0.01 N/A 0.158±0.08 0.090±0.00 20.100±10.97
ENSMUST00000120918 0.035±0.00 N/A 0.141±0.00 0.046±0.04 0.257±0.13 0.633±0.12 0.107±0.05 0.036±0.00 0.043±0.03 0.211±0.11 0.053±0.02 0.210±0.16 0.068±0.03 N/A
ENSMUST00000125075 N/A 0.140±0.00 N/A N/A 0.473±0.00 0.769±0.00 0.184±0.03 N/A 0.025±0.00 0.279±0.13 0.193±0.01 0.318±0.00 N/A 17.722±0.00
ENSMUSG00000032532 ENSMUST00000035120 0.535±0.05 1.213±0.66 23.326±2.30 79.709±95.05 5.491±1.88 8.813±2.54 0.182±0.12 39.205±4.29 0.197±0.07 0.237±0.00 0.119±0.00 0.463±0.24 1.510±0.70 0.651±1.03
ENSMUSG00000032536 ENSMUST00000045903 19.915±4.13 11.662±0.00 13.525±1.17 11.721±2.34 18.572±0.42 45.752±1.78 16.237±0.80 11.434±4.27 5.449±2.70 17.132±0.41 12.730±0.78 8.986±2.26 5.187±0.59 6.201±0.66
ENSMUSG00000040936 ENSMUST00000051479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.021±0.00
ENSMUST00000051565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.132±0.24 N/A 76.398±34.95
ENSMUSG00000084706 ENSMUST00000122757 N/A N/A N/A 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.402±0.00
ENSMUSG00000084995 ENSMUST00000128080 N/A N/A 0.040±0.00 0.095±0.00 0.172±0.00 N/A N/A N/A N/A 0.077±0.00 N/A 0.239±0.15 N/A 38.850±19.53
ENSMUST00000156364 N/A N/A N/A N/A 0.142±0.00 N/A 0.045±0.00 0.050±0.00 N/A N/A N/A N/A N/A 41.698±20.74
ENSMUSG00000091336 ENSMUST00000172397 N/A N/A N/A 0.127±0.00 N/A N/A N/A N/A N/A N/A N/A 0.158±0.00 N/A 0.317±0.13

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