C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000483_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000182606-ENSG00000187094 CGP 9606 3:42013802-42266207
GeneTranscriptPositionBiotype
ENSG00000182606 (TRAK1)
trafficking protein, kinesin binding 1 		ENST00000327628 (TRAK1-004) 42091070-42225768 protein_coding
ENST00000341421 (TRAK1-002) 42160169-42212623 protein_coding
ENST00000396175 (TRAK1-001) 42160169-42225889 protein_coding
ENST00000418790 (TRAK1-009) 42149359-42184757 nonsense_mediated_decay
ENST00000427771 (TRAK1-007) 42193077-42202754 protein_coding
ENST00000449246 (TRAK1-003) 42149235-42204189 protein_coding
ENST00000469506 (TRAK1-008) 42160212-42184923 processed_transcript
ENST00000484786 (TRAK1-005) 42087200-42202906 processed_transcript
ENST00000487159 (TRAK1-006) 42013802-42225889 processed_transcript
ENST00000613405 (TRAK1-201) 42149235-42212615 protein_coding
ENSG00000187094 (CCK)
cholecystokinin 		ENST00000334681 (CCK-001) 42257825-42264903 protein_coding
ENST00000396169 (CCK-002) 42257825-42266207 protein_coding
ENST00000434608 (CCK-003) 42257826-42263947 protein_coding
ENST00000484359 (CCK-004) 42262984-42264765 retained_intron
ENSG00000222872 (RNU4-78P)
RNA, U4 small nuclear 78, pseudogene 		ENST00000410940 (RNU4-78P-201) 42221840-42221965 snRNA
ENSG00000229339 (RP11-193I22.2)
 ENST00000434712 (RP11-193I22.2-001) 42051181-42051694 processed_pseudogene
ENSG00000234562 (TPMTP2)
thiopurine S-methyltransferase pseudogene 2 		ENST00000414372 (TPMTP2-001) 42145646-42146371 processed_pseudogene
CIL_000483_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032536-ENSMUSG00000032532 CGP 10090 9:121366958-121495689
GeneTranscriptPositionBiotype
ENSMUSG00000032532 (Cck)
cholecystokinin 		ENSMUST00000035120 (Cck-201) 121489825-121495689 protein_coding
ENSMUSG00000032536 (Trak1)
trafficking protein, kinesin binding 1 		ENSMUST00000045903 (Trak1-201) 121366958-121474916 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000483_0001ENSG00000182606ENST00000327628ENST00000341421ENST00000396175ENST00000418790ENST00000427771ENST00000449246ENST00000469506ENST00000484786ENST00000487159ENST00000613405ENSG00000187094ENST00000334681ENST00000396169ENST00000434608ENST00000484359ENSG00000222872ENST00000410940ENSG00000229339ENST00000434712ENSG00000234562ENST00000414372CIL_000483_0002ENSMUSG00000032532ENSMUST00000035120ENSMUSG00000032536ENSMUST00000045903
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000483_0001ENSG00000182606ENST00000327628ENST00000341421ENST00000396175ENST00000449246ENST00000484786ENST00000487159ENST00000613405ENSG00000187094ENST00000334681ENST00000396169ENST00000434608ENST00000484359ENSG00000222872ENST00000410940ENSG00000229339ENST00000434712ENSG00000234562ENST00000414372CIL_000483_0002ENSMUSG00000032532ENSMUST00000035120ENSMUSG00000032536ENSMUST00000045903
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000182606 ENST00000327628 N/A N/A N/A 5.187±1.85 N/A 1.514±0.00 N/A N/A N/A 2.065±0.00 N/A 1.259±0.00 N/A 1.684±0.00
ENST00000341421 N/A 3.812±0.00 N/A N/A 3.843±0.20 4.452±0.00 N/A 1.378±0.00 3.669±0.00 2.966±1.68 N/A 3.825±2.37 3.946±1.11 2.743±0.12
ENST00000396175 N/A N/A 2.070±0.00 N/A N/A 1.195±0.00 N/A 2.392±0.00 N/A N/A N/A 2.866±0.00 N/A 1.235±0.00
ENST00000418790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449246 N/A N/A N/A N/A N/A N/A 3.670±0.00 N/A N/A N/A 15.408±2.55 N/A N/A N/A
ENST00000469506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484786 N/A N/A 7.562±0.00 4.508±0.00 4.737±0.00 8.422±0.00 11.700±0.00 0.708±0.00 7.988±0.00 2.677±0.00 26.816±5.00 2.668±0.00 N/A N/A
ENST00000487159 5.940±0.00 9.616±0.00 N/A 6.970±0.00 10.471±0.00 2.378±0.10 10.296±0.00 5.176±0.00 1.235±0.61 8.997±0.00 3.603±0.00 4.914±1.52 4.071±1.08 4.230±1.17
ENST00000613405 N/A N/A N/A N/A N/A N/A N/A 1.393±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000187094 ENST00000334681 N/A N/A N/A 73.415±13.20 N/A 0.926±0.00 N/A 0.079±0.00 0.184±0.00 3.134±0.00 N/A 0.162±0.00 2.043±0.00 0.326±0.00
ENST00000396169 N/A N/A N/A 6.677±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.208±0.00
ENST00000434608 N/A N/A N/A 31.115±0.00 N/A N/A N/A 0.083±0.00 N/A 0.258±0.00 N/A N/A 1.382±0.80 0.569±0.00
ENST00000484359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00
ENSG00000222872 ENST00000410940 0.507±0.00 0.162±0.00 N/A 0.513±0.00 0.317±0.00 0.299±0.00 0.321±0.00 N/A N/A N/A N/A N/A 1.606±0.00 0.151±0.00
ENSG00000229339 ENST00000434712 N/A 0.065±0.00 N/A 0.195±0.00 N/A N/A 0.127±0.00 0.120±0.00 N/A N/A N/A 1.147±0.00 N/A N/A
ENSG00000234562 ENST00000414372 0.058±0.00 0.088±0.00 N/A 0.400±0.00 N/A N/A N/A 0.113±0.00 N/A 0.113±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032532 ENSMUST00000035120 0.535±0.05 1.213±0.66 23.326±2.30 79.709±95.05 5.491±1.88 8.813±2.54 0.182±0.12 39.205±4.29 0.197±0.07 0.237±0.00 0.119±0.00 0.463±0.24 1.510±0.70 0.651±1.03
ENSMUSG00000032536 ENSMUST00000045903 19.915±4.13 11.662±0.00 13.525±1.17 11.721±2.34 18.572±0.42 45.752±1.78 16.237±0.80 11.434±4.27 5.449±2.70 17.132±0.41 12.730±0.78 8.986±2.26 5.187±0.59 6.201±0.66

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