C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HOX transcript antisense RNA
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000228630 HOTAIR 9606 - 12:53962308-53974956 antisense
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000424518 HOTAIR-001 53962308-53974956 antisense
  ENST00000425595 HOTAIR-005 53963802-53966630 antisense
  ENST00000439545 HOTAIR-003 53964085-53968914 antisense
  ENST00000453875 HOTAIR-004 53963901-53967355 antisense
  ENST00000455246 HOTAIR-002 53963749-53974947 antisense

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverMuscleOvaryPlacentaTestisENST00000424518ENST00000425595ENST00000439545ENST00000453875ENST00000455246
Transcript ID Breast Colon Liver Muscle Ovary Placenta Testis
ENST00000424518 0.045±0.00 0.054±0.00 N/A 0.017±0.00 0.206±0.03 0.085±0.00 1.916±1.40
ENST00000425595 N/A N/A N/A 0.186±0.00 N/A N/A N/A
ENST00000439545 N/A N/A N/A N/A N/A 0.143±0.00 N/A
ENST00000453875 N/A N/A N/A N/A 0.068±0.00 0.106±0.00 N/A
ENST00000455246 N/A N/A 0.724±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TO CIL_0002TO_0002 CGP 12:53954834-53977643

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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