C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002TO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000070352-ENSDARG00000070351 CGP 7955 23:36115143-36129676
GeneTranscriptPositionBiotype
ENSDARG00000070351 (hoxc11a)
homeo box C11a 		ENSDART00000103146 (hoxc11a-201) 36126424-36129303 protein_coding
ENSDART00000133760 (hoxc11a-001) 36126342-36129676 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002TO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000123407-ENSG00000123388 CGP 9606 12:53954834-53977643
GeneTranscriptPositionBiotype
ENSG00000123388 (HOXC11)
homeobox C11 		ENST00000243082 (HOXC11-002) 53973128-53976419 protein_coding
ENST00000546378 (HOXC11-001) 53973126-53977643 protein_coding
ENSG00000123407 (HOXC12)
homeobox C12 		ENST00000243103 (HOXC12-001) 53954834-53958956 protein_coding
ENSG00000228630 (HOTAIR)
HOX transcript antisense RNA 		ENST00000424518 (HOTAIR-001) 53962308-53974956 antisense
ENST00000425595 (HOTAIR-005) 53963802-53966630 antisense
ENST00000439545 (HOTAIR-003) 53964085-53968914 antisense
ENST00000453875 (HOTAIR-004) 53963901-53967355 antisense
ENST00000455246 (HOTAIR-002) 53963749-53974947 antisense
ENSG00000274817 (HOTAIR_4)
HOTAIR intron conserved region 4 		ENST00000616509 (HOTAIR_4.1-201) 53968002-53968178 misc_RNA
ENSG00000277129 (HOTAIR_5)
HOTAIR intron conserved region 5 		ENST00000611375 (HOTAIR_5.1-201) 53968351-53968501 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002TO_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050328-ENSMUSG00000001656 CGP 10090 15:102936757-102957708
GeneTranscriptPositionBiotype
ENSMUSG00000001656 (Hoxc11)
homeobox C11 		ENSMUST00000001701 (Hoxc11-001) 102954427-102957708 protein_coding
ENSMUSG00000050328 (Hoxc12)
homeobox C12 		ENSMUST00000055562 (Hoxc12-001) 102936757-102938609 protein_coding
ENSMUSG00000086903 (Hotair)
HOX transcript antisense RNA (non-protein coding) 		ENSMUST00000151949 (Hotair-001) 102944062-102947730 lincRNA
ENSMUSG00000099328 (Gm28011)
predicted gene, 28011 		ENSMUST00000184097 (Gm28011-201) 102949434-102949608 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisCIL_0002TO_0001ENSDARG00000070351ENSDART00000103146ENSDART00000133760CIL_0002TO_0002ENSG00000123388ENST00000243082ENST00000546378ENSG00000123407ENST00000243103ENSG00000228630ENST00000424518ENST00000425595ENST00000439545ENST00000453875ENST00000455246ENSG00000274817ENST00000616509ENSG00000277129ENST00000611375CIL_0002TO_0003ENSMUSG00000001656ENSMUST00000001701ENSMUSG00000050328ENSMUST00000055562ENSMUSG00000086903ENSMUST00000151949ENSMUSG00000099328ENSMUST00000184097
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisCIL_0002TO_0001ENSDARG00000070351ENSDART00000103146ENSDART00000133760CIL_0002TO_0002ENSG00000123388ENST00000243082ENST00000546378ENSG00000123407ENST00000243103ENSG00000228630ENST00000424518ENST00000425595ENST00000439545ENST00000453875ENST00000455246ENSG00000274817ENST00000616509ENSG00000277129ENST00000611375CIL_0002TO_0003ENSMUSG00000001656ENSMUST00000001701ENSMUSG00000050328ENSMUST00000055562ENSMUSG00000086903ENSMUST00000151949ENSMUSG00000099328ENSMUST00000184097
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSDARG00000070351 ENSDART00000103146 N/A N/A N/A N/A N/A N/A 0.135±0.00 N/A N/A 0.327±0.00 N/A N/A N/A
ENSDART00000133760 N/A N/A N/A N/A N/A N/A 0.104±0.01 0.316±0.04 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSG00000123388 ENST00000243082 1.392±0.00 0.828±0.00 N/A 0.014±0.00 0.125±0.00 0.101±0.00 N/A 0.616±0.00 N/A 0.683±0.00 2.260±2.64 0.395±0.21 0.765±0.30
ENST00000546378 N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A
ENSG00000123407 ENST00000243103 0.941±0.00 1.156±0.00 N/A N/A 0.167±0.00 N/A 0.084±0.00 N/A N/A 0.019±0.00 0.542±0.61 0.136±0.11 0.132±0.08
ENSG00000228630 ENST00000424518 N/A N/A N/A N/A 0.045±0.00 0.054±0.00 N/A N/A N/A 0.017±0.00 0.206±0.03 0.085±0.00 1.916±1.40
ENST00000425595 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.00 N/A N/A N/A
ENST00000439545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.143±0.00 N/A
ENST00000453875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.00 0.106±0.00 N/A
ENST00000455246 N/A N/A N/A N/A N/A N/A N/A N/A 0.724±0.00 N/A N/A N/A N/A
ENSG00000274817 ENST00000616509 N/A N/A N/A N/A 7.421±0.00 N/A N/A N/A N/A N/A N/A N/A 0.263±0.00
ENSG00000277129 ENST00000611375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.654±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUSG00000001656 ENSMUST00000001701 0.497±0.31 N/A 1.309±0.02 N/A 0.117±0.05 0.030±0.01 N/A 0.120±0.04 N/A 2.842±0.46 0.049±0.03 0.090±0.06 0.024±0.01
ENSMUSG00000050328 ENSMUST00000055562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 0.048±0.02
ENSMUSG00000086903 ENSMUST00000151949 0.141±0.09 N/A 1.721±0.14 0.012±0.00 N/A N/A N/A 0.035±0.01 N/A 0.302±0.13 0.112±0.11 0.019±0.01 0.040±0.02
ENSMUSG00000099328 ENSMUST00000184097 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.608±0.29 N/A N/A N/A

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