C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein associated with topoisomerase II homolog 2 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000229474 PATL2 9606 - 15:44665732-44711316 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000434130 PATL2-201 44665733-44676888 protein_coding
  ENST00000558159 PATL2-005 44665733-44667019 retained_intron
  ENST00000558481 PATL2-004 44669803-44675619 nonsense_mediated_decay
  ENST00000558573 PATL2-008 44674763-44711316 processed_transcript
  ENST00000558809 PATL2-006 44665735-44668485 protein_coding
  ENST00000560110 PATL2-002 44672118-44676824 protein_coding
  ENST00000560775 PATL2-001 44665732-44676550 protein_coding
  ENST00000560780 PATL2-003 44665735-44676888 protein_coding
  ENST00000561082 PATL2-007 44665736-44667278 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000434130ENST00000558159ENST00000558481ENST00000558573ENST00000558809ENST00000560775ENST00000560780ENST00000561082
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000434130 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.838±0.00 N/A N/A N/A 0.107±0.00
ENST00000558159 N/A N/A N/A N/A 0.219±0.00 N/A N/A N/A N/A N/A N/A 0.272±0.14 N/A 0.077±0.01
ENST00000558481 N/A N/A N/A N/A N/A 0.027±0.00 N/A 0.652±0.13 N/A N/A N/A 0.505±0.29 0.058±0.00 N/A
ENST00000558573 0.080±0.00 1.481±0.00 0.290±0.00 0.089±0.06 N/A 0.068±0.06 N/A 0.023±0.00 0.101±0.07 0.400±0.06 0.011±0.00 0.057±0.00 0.053±0.00 0.013±0.00
ENST00000558809 N/A N/A N/A 0.171±0.00 N/A N/A 0.235±0.00 N/A 0.907±0.79 N/A N/A N/A N/A N/A
ENST00000560775 0.037±0.00 1.750±0.00 0.118±0.00 N/A 0.059±0.00 0.073±0.03 N/A N/A N/A N/A N/A 0.305±0.17 0.075±0.02 0.055±0.00
ENST00000560780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.309±0.00 0.075±0.00 0.080±0.00
ENST00000561082 0.080±0.00 N/A N/A N/A 0.264±0.00 N/A 1.154±0.00 N/A N/A 1.050±0.00 N/A N/A 0.203±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DJ CIL_0004DJ_0001 CGP 15:44562696-44711316
CIL_0004DK CIL_0004DK_0001 CGP 15:44665732-44718877

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 IEA cytoplasmic mRNA processing body
GO:0003723 ISS RNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0010607 IEA negative regulation of cytoplasmic mRNA processing body assembly
GO:0017148 ISS negative regulation of translation
GO:0030529 ISS ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089567 PATL2 protein associated with topoisomerase II homolog 2 (yeast) protein_coding Danio_rerio
ENSMUSG00000027233 Patl2 protein associated with topoisomerase II homolog 2 (yeast) protein_coding Mus_musculus

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