C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004DJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000104133-ENSG00000229474 CGP 9606 15:44562696-44711316
GeneTranscriptPositionBiotype
ENSG00000104131 (EIF3J)
eukaryotic translation initiation factor 3, subunit J 		ENST00000261868 (EIF3J-001) 44537057-44562803 protein_coding
ENST00000424492 (EIF3J-003) 44537125-44561999 protein_coding
ENST00000535391 (EIF3J-002) 44537183-44561447 protein_coding
ENST00000536248 (EIF3J-004) 44554624-44560575 protein_coding
ENST00000558053 (EIF3J-006) 44551438-44557751 retained_intron
ENST00000558227 (EIF3J-005) 44550683-44554574 retained_intron
ENST00000558353 (EIF3J-007) 44557505-44563029 nonsense_mediated_decay
ENSG00000104133 (SPG11)
spastic paraplegia 11 (autosomal recessive) 		ENST00000261866 (SPG11-001) 44562696-44663664 protein_coding
ENST00000427534 (SPG11-004) 44563121-44663647 protein_coding
ENST00000535302 (SPG11-002) 44562854-44663675 protein_coding
ENST00000557866 (SPG11-021) 44633470-44651644 non_stop_decay
ENST00000558080 (SPG11-026) 44573358-44575272 retained_intron
ENST00000558093 (SPG11-011) 44598354-44606158 retained_intron
ENST00000558138 (SPG11-019) 44564639-44572824 protein_coding
ENST00000558155 (SPG11-013) 44585838-44596346 nonsense_mediated_decay
ENST00000558253 (SPG11-014) 44585652-44590937 processed_transcript
ENST00000558319 (SPG11-006) 44573357-44663678 protein_coding
ENST00000558561 (SPG11-024) 44596804-44598679 retained_intron
ENST00000558790 (SPG11-015) 44584259-44590528 processed_transcript
ENST00000558988 (SPG11-023) 44600260-44610857 protein_coding
ENST00000558989 (SPG11-008) 44615428-44621866 retained_intron
ENST00000559193 (SPG11-003) 44622476-44663658 protein_coding
ENST00000559347 (SPG11-027) 44565966-44572640 processed_transcript
ENST00000559511 (SPG11-007) 44562697-44584527 protein_coding
ENST00000559754 (SPG11-010) 44600564-44610859 protein_coding
ENST00000559822 (SPG11-016) 44573734-44584451 nonsense_mediated_decay
ENST00000559933 (SPG11-017) 44570553-44573820 retained_intron
ENST00000560299 (SPG11-020) 44564553-44566144 retained_intron
ENST00000560435 (SPG11-022) 44613509-44620305 nonsense_mediated_decay
ENST00000560858 (SPG11-025) 44585762-44595273 nonsense_mediated_decay
ENST00000561268 (SPG11-018) 44567338-44573683 retained_intron
ENST00000561391 (SPG11-012) 44596116-44597172 retained_intron
ENSG00000206957 (Y_RNA)
Y RNA 		ENST00000384230 (Y_RNA.1-657) 44697333-44697430 misc_RNA
ENSG00000229474 (PATL2)
protein associated with topoisomerase II homolog 2 (yeast) 		ENST00000434130 (PATL2-201) 44665733-44676888 protein_coding
ENST00000558159 (PATL2-005) 44665733-44667019 retained_intron
ENST00000558481 (PATL2-004) 44669803-44675619 nonsense_mediated_decay
ENST00000558573 (PATL2-008) 44674763-44711316 processed_transcript
ENST00000558809 (PATL2-006) 44665735-44668485 protein_coding
ENST00000560110 (PATL2-002) 44672118-44676824 protein_coding
ENST00000560775 (PATL2-001) 44665732-44676550 protein_coding
ENST00000560780 (PATL2-003) 44665735-44676888 protein_coding
ENST00000561082 (PATL2-007) 44665736-44667278 retained_intron
CIL_0004DJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033396-ENSMUSG00000027233 CGP 10090 2:122053520-122186189
GeneTranscriptPositionBiotype
ENSMUSG00000027233 (Patl2)
protein associated with topoisomerase II homolog 2 (yeast) 		ENSMUST00000028665 (Patl2-001) 122120108-122186189 protein_coding
ENSMUSG00000027236 (Eif3j1)
eukaryotic translation initiation factor 3, subunit J1 		ENSMUST00000028668 (Eif3j1-001) 122028546-122056598 protein_coding
ENSMUST00000142747 (Eif3j1-002) 122028652-122029328 processed_transcript
ENSMUSG00000033368 (Trim69)
tripartite motif-containing 69 		ENSMUST00000036089 (Trim69-001) 122160700-122179027 protein_coding
ENSMUST00000143088 (Trim69-002) 122160802-122179024 processed_transcript
ENSMUSG00000033396 (Spg11)
spastic paraplegia 11 		ENSMUST00000036450 (Spg11-001) 122053520-122118386 protein_coding
ENSMUST00000133145 (Spg11-002) 122093540-122118296 processed_transcript
ENSMUST00000135847 (Spg11-003) 122107666-122118375 processed_transcript
ENSMUSG00000060802 (B2m)
beta-2 microglobulin 		ENSMUST00000102476 (B2m-001) 122147686-122153083 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004DJ_0001ENSG00000104131ENST00000261868ENST00000424492ENST00000535391ENST00000536248ENST00000558053ENST00000558227ENST00000558353ENSG00000104133ENST00000261866ENST00000427534ENST00000535302ENST00000557866ENST00000558080ENST00000558093ENST00000558138ENST00000558155ENST00000558253ENST00000558319ENST00000558561ENST00000558790ENST00000558988ENST00000558989ENST00000559193ENST00000559347ENST00000559511ENST00000559754ENST00000559822ENST00000559933ENST00000560299ENST00000560435ENST00000560858ENST00000561268ENST00000561391ENSG00000206957ENST00000384230ENSG00000229474ENST00000434130ENST00000558159ENST00000558481ENST00000558573ENST00000558809ENST00000560110ENST00000560775ENST00000560780ENST00000561082CIL_0004DJ_0002ENSMUSG00000027233ENSMUST00000028665ENSMUSG00000027236ENSMUST00000028668ENSMUST00000142747ENSMUSG00000033368ENSMUST00000036089ENSMUST00000143088ENSMUSG00000033396ENSMUST00000036450ENSMUST00000133145ENSMUST00000135847ENSMUSG00000060802ENSMUST00000102476
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004DJ_0001ENSG00000104131ENST00000261868ENST00000424492ENST00000535391ENSG00000104133ENST00000261866ENST00000427534ENST00000535302ENST00000558319ENST00000559193ENST00000559511ENSG00000206957ENST00000384230ENSG00000229474ENST00000434130ENST00000558159ENST00000558481ENST00000558573ENST00000558809ENST00000560775ENST00000560780ENST00000561082CIL_0004DJ_0002ENSMUSG00000027233ENSMUST00000028665ENSMUSG00000027236ENSMUST00000028668ENSMUSG00000033368ENSMUST00000036089ENSMUST00000143088ENSMUSG00000033396ENSMUST00000036450ENSMUSG00000060802ENSMUST00000102476
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104131 ENST00000261868 5.810±0.00 7.782±0.00 N/A 4.895±2.66 6.271±0.00 3.577±0.00 4.978±2.84 5.908±3.09 5.532±2.49 5.887±0.00 7.072±4.03 6.356±1.76 8.407±0.05 10.695±0.00
ENST00000424492 11.312±0.00 8.035±0.00 N/A 10.536±0.00 12.259±0.00 6.836±0.00 13.421±0.00 20.000±0.00 13.720±0.00 11.705±0.00 21.484±0.00 12.845±0.00 13.686±1.20 19.265±0.00
ENST00000535391 13.639±0.00 N/A N/A 16.543±0.00 N/A 16.859±0.00 N/A N/A N/A N/A 18.942±0.00 N/A N/A N/A
ENST00000536248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000104133 ENST00000261866 3.640±0.00 3.336±0.00 N/A 2.048±0.56 2.509±0.71 3.594±1.37 4.734±0.00 2.836±0.91 2.628±1.22 5.366±2.70 3.717±0.00 4.003±1.10 3.742±2.09 4.975±0.00
ENST00000427534 N/A N/A 1.899±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535302 N/A N/A N/A N/A 3.161±0.00 N/A 2.158±0.00 N/A 2.298±0.00 N/A 1.115±0.00 N/A N/A N/A
ENST00000557866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558319 N/A N/A 2.486±0.00 N/A 3.591±0.00 7.122±0.00 N/A 3.755±0.00 N/A 4.579±0.00 N/A 4.936±0.00 N/A N/A
ENST00000558561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559193 N/A N/A 3.820±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559511 N/A 9.026±0.00 5.448±0.00 N/A 5.372±0.00 5.523±0.00 N/A 10.785±0.00 5.533±0.00 6.397±0.00 N/A 12.436±6.07 N/A 17.393±3.77
ENST00000559754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206957 ENST00000384230 N/A 1.608±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229474 ENST00000434130 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.838±0.00 N/A N/A N/A 0.107±0.00
ENST00000558159 N/A N/A N/A N/A 0.219±0.00 N/A N/A N/A N/A N/A N/A 0.272±0.14 N/A 0.077±0.01
ENST00000558481 N/A N/A N/A N/A N/A 0.027±0.00 N/A 0.652±0.13 N/A N/A N/A 0.505±0.29 0.058±0.00 N/A
ENST00000558573 0.080±0.00 1.481±0.00 0.290±0.00 0.089±0.06 N/A 0.068±0.06 N/A 0.023±0.00 0.101±0.07 0.400±0.06 0.011±0.00 0.057±0.00 0.053±0.00 0.013±0.00
ENST00000558809 N/A N/A N/A 0.171±0.00 N/A N/A 0.235±0.00 N/A 0.907±0.79 N/A N/A N/A N/A N/A
ENST00000560110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560775 0.037±0.00 1.750±0.00 0.118±0.00 N/A 0.059±0.00 0.073±0.03 N/A N/A N/A N/A N/A 0.305±0.17 0.075±0.02 0.055±0.00
ENST00000560780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.309±0.00 0.075±0.00 0.080±0.00
ENST00000561082 0.080±0.00 N/A N/A N/A 0.264±0.00 N/A 1.154±0.00 N/A N/A 1.050±0.00 N/A N/A 0.203±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027233 ENSMUST00000028665 N/A 0.041±0.01 0.003±0.00 0.009±0.00 0.030±0.00 N/A 0.021±0.00 0.020±0.01 0.031±0.01 0.031±0.01 0.017±0.00 1.054±0.47 1.267±0.48 0.269±0.17
ENSMUSG00000027236 ENSMUST00000028668 1.865±0.04 6.995±2.20 3.549±1.35 3.224±2.49 2.454±1.07 2.720±0.11 2.140±0.39 1.429±0.52 6.552±5.80 2.419±0.58 13.245±2.29 5.164±1.35 9.312±3.45 3.020±2.06
ENSMUST00000142747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000033368 ENSMUST00000036089 0.101±0.04 0.066±0.00 0.023±0.01 0.008±0.00 0.070±0.02 N/A 0.027±0.02 0.036±0.03 0.064±0.03 0.063±0.04 0.030±0.01 0.090±0.04 0.154±0.07 65.145±22.11
ENSMUST00000143088 0.011±0.01 0.051±0.00 N/A N/A 0.108±0.00 N/A 0.018±0.00 0.037±0.03 0.012±0.00 0.034±0.00 N/A N/A 0.218±0.00 N/A
ENSMUSG00000033396 ENSMUST00000036450 4.914±0.67 3.478±1.27 3.340±0.63 4.557±1.64 3.216±0.61 4.356±1.53 1.786±0.26 2.862±0.66 2.290±0.34 5.211±0.41 1.578±0.07 5.710±1.40 4.921±0.28 3.437±1.02
ENSMUST00000133145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000060802 ENSMUST00000102476 1282.028±410.99 1355.892±133.95 356.093±15.47 12.911±5.85 1588.861±583.88 584.213±64.99 229.822±98.90 444.797±71.23 976.003±767.96 874.900±409.36 56.827±13.59 309.283±100.95 178.765±90.74 54.589±48.43

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