C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin related protein 2/3 complex, subunit 1A, 41kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000241685 ARPC1A 9606 + 7:99325898-99388164 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262942 ARPC1A-001 99325910-99366257 protein_coding
  ENST00000432786 ARPC1A-009 99325927-99366226 nonsense_mediated_decay
  ENST00000441989 ARPC1A-003 99325898-99388164 nonsense_mediated_decay
  ENST00000463009 ARPC1A-004 99358666-99366214 processed_transcript
  ENST00000471960 ARPC1A-005 99353935-99360242 processed_transcript
  ENST00000477240 ARPC1A-007 99363465-99366262 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262942
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262942 53.239±0.00 13.768±0.00 47.730±12.35 38.167±12.02 40.900±11.19 35.868±23.40 38.098±17.72 26.913±8.51 42.434±19.32 34.565±0.00 94.670±31.12 88.915±6.03 83.432±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005L5 CIL_0005L5_0002 CGP 7:99325898-99394801

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005885 IEA Arp2/3 protein complex
GO:0015629 TAS:IEA actin cytoskeleton
GO:0030036 TAS actin cytoskeleton organization
GO:0030833 IEA regulation of actin filament polymerization
GO:0034314 IEA Arp2/3 complex-mediated actin nucleation
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0045087 TAS innate immune response
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008383 arpc1a actin related protein 2/3 complex, subunit 1A protein_coding Danio_rerio
ENSMUSG00000029621 Arpc1a actin related protein 2/3 complex, subunit 1A protein_coding Mus_musculus

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