C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin related protein 2/3 complex, subunit 1A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029621 Arpc1a 10090 + 5:145083830-145108761 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031625 Arpc1a-001 145083830-145108761 protein_coding
  ENSMUST00000124379 Arpc1a-004 145084100-145097228 protein_coding
  ENSMUST00000127694 Arpc1a-002 145083906-145108756 processed_transcript
  ENSMUST00000134835 Arpc1a-003 145083884-145096183 processed_transcript
  ENSMUST00000142276 Arpc1a-006 145104273-145108592 retained_intron
  ENSMUST00000147564 Arpc1a-005 145096257-145098928 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031625ENSMUST00000134835ENSMUST00000142276
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031625 73.581±8.76 49.472±10.15 139.889±17.17 78.539±18.72 53.324±10.52 52.556±7.59 30.522±3.21 66.647±2.09 39.806±6.98 70.709±1.92 11.757±0.85 64.365±15.40 53.962±17.83 67.274±21.83
ENSMUST00000134835 N/A N/A N/A 126.794±0.00 N/A N/A N/A N/A N/A N/A N/A 124.912±0.00 149.993±37.55 176.400±0.00
ENSMUST00000142276 N/A N/A N/A 27.402±0.00 N/A N/A N/A N/A N/A N/A N/A 13.467±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TQ CIL_0004TQ_0002 CGP 5:144876495-145084030
CIL_0005L5 CIL_0005L5_0003 CGP 5:145083830-145130705

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005737 IEA cytoplasm
GO:0005885 TAS Arp2/3 protein complex
GO:0008150 ND biological_process
GO:0030833 IEA regulation of actin filament polymerization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008383 arpc1a actin related protein 2/3 complex, subunit 1A protein_coding Danio_rerio
ENSG00000241685 ARPC1A actin related protein 2/3 complex, subunit 1A, 41kDa protein_coding Homo_sapiens

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