C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ADP-ribosylation factor GTPase activating protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000242247 ARFGAP3 9606 - 22:42796502-42858106 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263245 ARFGAP3-001 42796502-42857402 protein_coding
  ENST00000435208 ARFGAP3-004 42835413-42858106 protein_coding
  ENST00000437119 ARFGAP3-010 42797414-42857239 protein_coding
  ENST00000453516 ARFGAP3-005 42807074-42831652 protein_coding
  ENST00000454099 ARFGAP3-003 42823656-42857268 protein_coding
  ENST00000493606 ARFGAP3-002 42847234-42857294 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263245ENST00000437119ENST00000453516
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263245 12.602±0.00 8.183±0.00 7.346±3.12 8.627±0.08 9.404±2.55 5.154±2.49 17.357±9.91 7.399±1.55 17.091±7.08 7.459±4.36 15.587±6.29 12.273±0.77 22.273±0.96
ENST00000437119 N/A N/A N/A N/A N/A N/A N/A 3.621±0.00 N/A N/A 5.901±0.00 N/A N/A
ENST00000453516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.215±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040L CIL_00040L_0001 CGP 22:42692121-42858106
CIL_0004U5 CIL_0004U5_0001 CGP 22:42796502-43015145

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005829 IDA cytosol
GO:0006886 NAS intracellular protein transport
GO:0008060 IDA:IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0008565 NAS protein transporter activity
GO:0009306 IEP protein secretion
GO:0016020 IDA membrane
GO:0016192 NAS vesicle-mediated transport
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000097583 arfgap3 ADP-ribosylation factor GTPase activating protein 3 protein_coding Danio_rerio
ENSMUSG00000054277 Arfgap3 ADP-ribosylation factor GTPase activating protein 3 protein_coding Mus_musculus

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