C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00040L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000128274-ENSG00000242247 CGP 9606 22:42692121-42858106
GeneTranscriptPositionBiotype
ENSG00000100266 (PACSIN2)
protein kinase C and casein kinase substrate in neurons 2 		ENST00000263246 (PACSIN2-001) 42869771-43015145 protein_coding
ENST00000337959 (PACSIN2-201) 42869768-42947041 protein_coding
ENST00000402229 (PACSIN2-004) 42871128-42959878 protein_coding
ENST00000403744 (PACSIN2-005) 42870930-42947041 protein_coding
ENST00000407585 (PACSIN2-003) 42869775-42959881 protein_coding
ENST00000418133 (PACSIN2-009) 42890944-42945873 protein_coding
ENST00000422336 (PACSIN2-006) 42890944-43002440 protein_coding
ENST00000445706 (PACSIN2-010) 42893457-43015098 nonsense_mediated_decay
ENST00000453079 (PACSIN2-008) 42893574-42959899 protein_coding
ENST00000453643 (PACSIN2-007) 42890935-43015135 protein_coding
ENST00000507586 (PACSIN2-015) 42835412-42876207 nonsense_mediated_decay
ENSG00000128274 (A4GALT)
alpha 1,4-galactosyltransferase 		ENST00000249005 (A4GALT-001) 42692121-42695633 protein_coding
ENST00000381278 (A4GALT-003) 42692122-42695633 protein_coding
ENST00000401850 (A4GALT-004) 42692121-42694986 protein_coding
ENST00000465765 (A4GALT-002) 42695171-42721298 processed_transcript
ENST00000483026 (A4GALT-005) 42693971-42695633 processed_transcript
ENSG00000226989 (AL049758.2)
 ENST00000423154 (AL049758.2-001) 42853403-42853799 processed_pseudogene
ENSG00000229608 (GOLGA2P4)
golgin A2 pseudogene 4 		ENST00000441462 (GOLGA2P4-001) 42784462-42787100 unprocessed_pseudogene
ENSG00000234009 (RPL5P34)
ribosomal protein L5 pseudogene 34 		ENST00000426545 (RPL5P34-001) 42776406-42777296 processed_pseudogene
ENSG00000242247 (ARFGAP3)
ADP-ribosylation factor GTPase activating protein 3 		ENST00000263245 (ARFGAP3-001) 42796502-42857402 protein_coding
ENST00000435208 (ARFGAP3-004) 42835413-42858106 protein_coding
ENST00000437119 (ARFGAP3-010) 42797414-42857239 protein_coding
ENST00000453516 (ARFGAP3-005) 42807074-42831652 protein_coding
ENST00000454099 (ARFGAP3-003) 42823656-42857268 protein_coding
ENST00000493606 (ARFGAP3-002) 42847234-42857294 retained_intron
ENSG00000274717 (RP1-47A17.1)
 ENST00000616842 (RP1-47A17.1-001) 42791814-42794313 processed_pseudogene
CIL_00040L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047878-ENSMUSG00000054277 CGP 10090 15:83226726-83350247
GeneTranscriptPositionBiotype
ENSMUSG00000047878 (A4galt)
alpha 1,4-galactosyltransferase 		ENSMUST00000049530 (A4galt-201) 83226726-83251774 protein_coding
ENSMUST00000164614 (A4galt-202) 83226726-83251731 protein_coding
ENSMUSG00000054277 (Arfgap3)
ADP-ribosylation factor GTPase activating protein 3 		ENSMUST00000067215 (Arfgap3-201) 83299740-83350247 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00040L_0001ENSG00000100266ENST00000263246ENST00000337959ENST00000402229ENST00000403744ENST00000407585ENST00000418133ENST00000422336ENST00000445706ENST00000453079ENST00000453643ENST00000507586ENSG00000128274ENST00000249005ENST00000381278ENST00000401850ENST00000465765ENST00000483026ENSG00000226989ENST00000423154ENSG00000229608ENST00000441462ENSG00000234009ENST00000426545ENSG00000242247ENST00000263245ENST00000435208ENST00000437119ENST00000453516ENST00000454099ENST00000493606ENSG00000274717ENST00000616842CIL_00040L_0002ENSMUSG00000047878ENSMUST00000049530ENSMUST00000164614ENSMUSG00000054277ENSMUST00000067215
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00040L_0001ENSG00000100266ENST00000263246ENST00000337959ENST00000402229ENSG00000128274ENST00000249005ENST00000381278ENST00000401850ENST00000483026ENSG00000226989ENST00000423154ENSG00000229608ENST00000441462ENSG00000234009ENST00000426545ENSG00000242247ENST00000263245ENST00000437119ENST00000453516ENSG00000274717ENST00000616842CIL_00040L_0002ENSMUSG00000047878ENSMUST00000049530ENSMUST00000164614ENSMUSG00000054277ENSMUST00000067215
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100266 ENST00000263246 17.664±0.00 14.291±0.00 4.468±0.00 7.261±6.21 10.231±6.07 17.867±9.60 9.572±7.46 38.832±0.00 5.729±1.72 30.905±0.00 7.752±0.00 29.948±27.74 40.128±11.65 22.526±3.41
ENST00000337959 N/A N/A N/A N/A N/A 3.319±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000402229 N/A N/A N/A N/A 4.842±0.00 N/A 1.495±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000403744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000407585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000128274 ENST00000249005 27.916±0.00 18.341±0.00 0.286±0.00 2.513±0.00 6.211±5.46 17.376±0.00 14.960±0.00 30.021±0.00 0.455±0.00 37.824±0.00 12.273±0.00 10.178±6.32 25.534±9.09 5.055±2.62
ENST00000381278 4.253±0.00 12.569±0.00 1.177±0.00 0.288±0.21 2.947±0.00 6.447±5.87 N/A 0.038±0.00 1.167±0.00 7.755±0.00 1.415±0.00 4.196±2.35 N/A 2.338±1.42
ENST00000401850 N/A N/A N/A N/A 0.703±0.59 N/A 2.543±1.75 3.818±0.00 0.334±0.00 0.309±0.00 0.627±0.00 1.647±0.00 N/A N/A
ENST00000465765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483026 N/A N/A N/A N/A N/A 0.740±0.00 N/A N/A N/A 1.194±0.00 N/A N/A N/A N/A
ENSG00000226989 ENST00000423154 0.179±0.00 N/A N/A 0.104±0.00 1.704±0.00 N/A 0.120±0.00 N/A N/A N/A N/A 0.175±0.00 N/A N/A
ENSG00000229608 ENST00000441462 N/A 0.114±0.00 N/A 0.033±0.00 N/A 0.084±0.00 N/A N/A N/A 0.058±0.00 N/A N/A N/A 0.130±0.00
ENSG00000234009 ENST00000426545 0.131±0.00 0.242±0.00 N/A 0.124±0.00 0.129±0.02 0.363±0.00 0.014±0.00 0.112±0.06 0.137±0.00 0.072±0.00 0.041±0.00 0.366±0.24 0.035±0.01 0.161±0.10
ENSG00000242247 ENST00000263245 12.602±0.00 8.183±0.00 N/A 7.346±3.12 8.627±0.08 9.404±2.55 5.154±2.49 17.357±9.91 7.399±1.55 17.091±7.08 7.459±4.36 15.587±6.29 12.273±0.77 22.273±0.96
ENST00000435208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437119 N/A N/A N/A N/A N/A N/A N/A N/A 3.621±0.00 N/A N/A 5.901±0.00 N/A N/A
ENST00000453516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.215±0.00
ENST00000454099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274717 ENST00000616842 0.017±0.00 0.036±0.00 N/A 0.023±0.00 0.042±0.00 N/A N/A 0.098±0.00 0.133±0.12 0.093±0.00 N/A 0.103±0.03 0.070±0.03 0.227±0.16
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000047878 ENSMUST00000049530 17.047±11.05 4.722±1.88 10.734±1.98 0.382±0.17 4.246±0.80 7.544±2.17 0.672±0.39 9.413±3.22 0.096±0.07 10.777±3.35 0.599±0.22 22.792±7.04 4.796±1.67 0.368±0.22
ENSMUST00000164614 8.165±4.27 3.289±0.56 16.498±0.07 0.234±0.02 3.561±1.31 9.327±3.75 1.313±0.51 5.551±1.24 0.061±0.01 7.869±3.74 0.235±0.03 15.299±6.04 4.250±1.55 0.447±0.19
ENSMUSG00000054277 ENSMUST00000067215 10.297±4.12 8.800±0.48 26.112±1.69 9.511±1.79 7.481±1.47 43.549±1.98 3.545±0.59 8.010±0.87 3.923±2.04 7.849±3.14 1.201±0.53 14.120±1.81 13.805±2.02 34.255±7.04

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