C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004U5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000242247-ENSG00000100266 CGP 9606 22:42796502-43015145
GeneTranscriptPositionBiotype
ENSG00000100266 (PACSIN2)
protein kinase C and casein kinase substrate in neurons 2 		ENST00000263246 (PACSIN2-001) 42869771-43015145 protein_coding
ENST00000337959 (PACSIN2-201) 42869768-42947041 protein_coding
ENST00000402229 (PACSIN2-004) 42871128-42959878 protein_coding
ENST00000403744 (PACSIN2-005) 42870930-42947041 protein_coding
ENST00000407585 (PACSIN2-003) 42869775-42959881 protein_coding
ENST00000418133 (PACSIN2-009) 42890944-42945873 protein_coding
ENST00000422336 (PACSIN2-006) 42890944-43002440 protein_coding
ENST00000445706 (PACSIN2-010) 42893457-43015098 nonsense_mediated_decay
ENST00000453079 (PACSIN2-008) 42893574-42959899 protein_coding
ENST00000453643 (PACSIN2-007) 42890935-43015135 protein_coding
ENST00000507586 (PACSIN2-015) 42835412-42876207 nonsense_mediated_decay
ENSG00000226989 (AL049758.2)
 ENST00000423154 (AL049758.2-001) 42853403-42853799 processed_pseudogene
ENSG00000242247 (ARFGAP3)
ADP-ribosylation factor GTPase activating protein 3 		ENST00000263245 (ARFGAP3-001) 42796502-42857402 protein_coding
ENST00000435208 (ARFGAP3-004) 42835413-42858106 protein_coding
ENST00000437119 (ARFGAP3-010) 42797414-42857239 protein_coding
ENST00000453516 (ARFGAP3-005) 42807074-42831652 protein_coding
ENST00000454099 (ARFGAP3-003) 42823656-42857268 protein_coding
ENST00000493606 (ARFGAP3-002) 42847234-42857294 retained_intron
CIL_0004U5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000054277-ENSMUSG00000016664 CGP 10090 15:83299740-83464606
GeneTranscriptPositionBiotype
ENSMUSG00000016664 (Pacsin2)
protein kinase C and casein kinase substrate in neurons 2 		ENSMUST00000056177 (Pacsin2-201) 83376122-83464570 protein_coding
ENSMUST00000165095 (Pacsin2-202) 83375607-83432850 protein_coding
ENSMUST00000171436 (Pacsin2-203) 83375607-83464606 protein_coding
ENSMUSG00000049414 (Gm5417)
predicted gene 5417 		ENSMUST00000079706 (Gm5417-201) 83405612-83406105 pseudogene
ENSMUSG00000054277 (Arfgap3)
ADP-ribosylation factor GTPase activating protein 3 		ENSMUST00000067215 (Arfgap3-201) 83299740-83350247 protein_coding
ENSMUSG00000075511 (1700001L05Rik)
RIKEN cDNA 1700001L05 gene 		ENSMUST00000100370 (1700001L05Rik-003) 83357560-83367277 lincRNA
ENSMUST00000177890 (1700001L05Rik-004) 83358618-83365142 lincRNA
ENSMUST00000178628 (1700001L05Rik-001) 83357526-83367282 lincRNA
ENSMUST00000179705 (1700001L05Rik-002) 83357534-83367011 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004U5_0001ENSG00000100266ENST00000263246ENST00000337959ENST00000402229ENST00000403744ENST00000407585ENST00000418133ENST00000422336ENST00000445706ENST00000453079ENST00000453643ENST00000507586ENSG00000226989ENST00000423154ENSG00000242247ENST00000263245ENST00000435208ENST00000437119ENST00000453516ENST00000454099ENST00000493606CIL_0004U5_0002ENSMUSG00000016664ENSMUST00000056177ENSMUST00000165095ENSMUST00000171436ENSMUSG00000049414ENSMUST00000079706ENSMUSG00000054277ENSMUST00000067215ENSMUSG00000075511ENSMUST00000100370ENSMUST00000177890ENSMUST00000178628ENSMUST00000179705
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004U5_0001ENSG00000100266ENST00000263246ENST00000337959ENST00000402229ENSG00000226989ENST00000423154ENSG00000242247ENST00000263245ENST00000437119ENST00000453516CIL_0004U5_0002ENSMUSG00000016664ENSMUST00000056177ENSMUST00000165095ENSMUST00000171436ENSMUSG00000049414ENSMUST00000079706ENSMUSG00000054277ENSMUST00000067215ENSMUSG00000075511ENSMUST00000100370ENSMUST00000177890ENSMUST00000178628ENSMUST00000179705
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100266 ENST00000263246 17.664±0.00 14.291±0.00 4.468±0.00 7.261±6.21 10.231±6.07 17.867±9.60 9.572±7.46 38.832±0.00 5.729±1.72 30.905±0.00 7.752±0.00 29.948±27.74 40.128±11.65 22.526±3.41
ENST00000337959 N/A N/A N/A N/A N/A 3.319±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000402229 N/A N/A N/A N/A 4.842±0.00 N/A 1.495±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000403744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000407585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226989 ENST00000423154 0.179±0.00 N/A N/A 0.104±0.00 1.704±0.00 N/A 0.120±0.00 N/A N/A N/A N/A 0.175±0.00 N/A N/A
ENSG00000242247 ENST00000263245 12.602±0.00 8.183±0.00 N/A 7.346±3.12 8.627±0.08 9.404±2.55 5.154±2.49 17.357±9.91 7.399±1.55 17.091±7.08 7.459±4.36 15.587±6.29 12.273±0.77 22.273±0.96
ENST00000435208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437119 N/A N/A N/A N/A N/A N/A N/A N/A 3.621±0.00 N/A N/A 5.901±0.00 N/A N/A
ENST00000453516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.215±0.00
ENST00000454099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016664 ENSMUST00000056177 4.121±0.00 4.024±0.00 5.234±0.00 8.585±6.84 3.828±0.47 7.293±0.70 9.181±0.00 10.096±1.12 6.926±4.22 9.584±2.77 2.042±0.13 28.415±15.24 39.146±24.20 13.339±2.83
ENSMUST00000165095 N/A 3.063±0.00 N/A N/A 2.741±0.00 N/A 13.756±3.76 6.110±0.30 3.759±2.34 N/A 2.097±0.47 4.258±1.22 N/A N/A
ENSMUST00000171436 9.876±6.57 6.898±0.38 5.151±0.00 6.224±5.97 4.753±1.88 13.149±5.24 8.301±0.00 16.624±8.00 10.616±8.66 10.362±2.80 2.150±1.40 10.323±5.22 21.312±8.77 6.830±2.43
ENSMUSG00000049414 ENSMUST00000079706 N/A N/A 1.560±0.00 2.609±0.00 0.196±0.06 N/A N/A N/A 2.154±0.29 N/A N/A N/A 0.371±0.00 N/A
ENSMUSG00000054277 ENSMUST00000067215 10.297±4.12 8.800±0.48 26.112±1.69 9.511±1.79 7.481±1.47 43.549±1.98 3.545±0.59 8.010±0.87 3.923±2.04 7.849±3.14 1.201±0.53 14.120±1.81 13.805±2.02 34.255±7.04
ENSMUSG00000075511 ENSMUST00000100370 1.157±0.19 0.186±0.03 3.051±0.00 0.057±0.03 0.552±0.16 0.698±0.20 0.195±0.03 0.420±0.12 0.883±0.42 0.324±0.07 0.045±0.02 0.398±0.00 0.686±0.41 82.871±38.63
ENSMUST00000177890 N/A N/A N/A 0.583±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.379±0.61 37.188±0.00
ENSMUST00000178628 1.345±0.00 0.168±0.06 1.705±0.00 N/A 0.649±0.32 0.864±0.12 N/A 0.373±0.14 0.779±0.05 N/A 0.066±0.01 2.353±1.15 0.592±0.33 47.952±22.93
ENSMUST00000179705 N/A 0.125±0.00 N/A N/A 0.799±0.00 N/A N/A N/A N/A N/A N/A 2.056±0.00 N/A N/A

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