C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: MSH5-SAPCD1 readthrough (NMD candidate)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000255152 MSH5-SAPCD1 9606 + 6:31740020-31764851 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000425424 MSH5-SAPCD1-202 31762996-31764845 protein_coding
  ENST00000476085 MSH5-SAPCD1-002 31762444-31764851 nonsense_mediated_decay
  ENST00000491552 MSH5-SAPCD1-004 31760720-31763144 processed_transcript
  ENST00000493662 MSH5-SAPCD1-001 31740020-31764850 nonsense_mediated_decay
  ENST00000498473 MSH5-SAPCD1-003 31759445-31764850 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyOvaryPlacentaTestisENST00000476085ENST00000491552ENST00000493662
Transcript ID Kidney Ovary Placenta Testis
ENST00000476085 N/A N/A 1.190±0.00 N/A
ENST00000491552 0.678±0.00 N/A N/A N/A
ENST00000493662 N/A 1.942±0.12 N/A 1.941±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006298 IEA mismatch repair
GO:0030983 IEA mismatched DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077479 MSH5 mutS homolog 5 protein_coding Danio_rerio
ENSMUSG00000007035 Msh5 mutS homolog 5 (E. coli) protein_coding Mus_musculus

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