C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mutS homolog 5 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000007035 Msh5 10090 - 17:35028605-35046745 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000007250 Msh5-001 35028605-35046622 protein_coding
  ENSMUST00000097338 Msh5-008 35028605-35046726 protein_coding
  ENSMUST00000165329 Msh5-002 35039146-35046525 retained_intron
  ENSMUST00000172491 Msh5-011 35044100-35046520 nonsense_mediated_decay
  ENSMUST00000172536 Msh5-005 35028683-35046542 nonsense_mediated_decay
  ENSMUST00000173124 Msh5-009 35028605-35029868 processed_transcript
  ENSMUST00000173685 Msh5-010 35039146-35043767 retained_intron
  ENSMUST00000173928 Msh5-006 35043975-35045011 retained_intron
  ENSMUST00000174026 Msh5-003 35028609-35033291 nonsense_mediated_decay
  ENSMUST00000174556 Msh5-004 35037093-35046745 nonsense_mediated_decay
  ENSMUST00000174603 Msh5-007 35028683-35046542 nonsense_mediated_decay
  ENSMUST00000174741 Msh5-012 35043966-35046116 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007250ENSMUST00000097338ENSMUST00000165329ENSMUST00000172491ENSMUST00000172536ENSMUST00000173124ENSMUST00000173928ENSMUST00000174026ENSMUST00000174556ENSMUST00000174603ENSMUST00000174741
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007250 0.157±0.02 0.084±0.02 0.303±0.00 0.508±0.34 0.502±0.18 0.634±0.12 N/A 0.335±0.14 1.798±1.51 0.940±0.03 N/A 0.320±0.13 1.486±0.52 3.036±0.42
ENSMUST00000097338 0.107±0.00 0.215±0.09 0.299±0.00 0.365±0.10 0.376±0.11 0.618±0.20 0.082±0.00 0.103±0.00 0.594±0.27 0.361±0.11 0.048±0.00 0.302±0.23 0.335±0.00 2.895±0.45
ENSMUST00000165329 N/A N/A N/A N/A N/A N/A N/A 0.231±0.00 N/A N/A 0.041±0.00 0.558±0.00 N/A N/A
ENSMUST00000172491 N/A 0.474±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172536 N/A N/A N/A N/A 0.336±0.00 N/A 0.078±0.03 0.184±0.00 0.256±0.00 N/A 0.066±0.00 N/A N/A N/A
ENSMUST00000173124 N/A N/A N/A 0.059±0.00 N/A N/A N/A N/A N/A N/A 0.231±0.11 N/A N/A N/A
ENSMUST00000173928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.00 0.169±0.00 N/A N/A
ENSMUST00000174026 N/A 0.332±0.09 N/A 0.251±0.20 0.669±0.13 0.617±0.07 N/A 0.389±0.00 1.125±1.01 0.866±0.12 0.106±0.06 0.465±0.18 0.320±0.00 N/A
ENSMUST00000174556 N/A 0.110±0.00 N/A 0.260±0.03 0.251±0.02 N/A 0.046±0.00 N/A 0.449±0.25 0.428±0.10 0.027±0.00 0.516±0.00 0.038±0.00 N/A
ENSMUST00000174603 N/A 0.072±0.00 N/A N/A N/A N/A 0.158±0.00 0.145±0.01 0.633±0.13 0.320±0.00 0.096±0.00 0.201±0.00 0.267±0.08 N/A
ENSMUST00000174741 N/A N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.627±0.23 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000795 IDA synaptonemal complex
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0006200 IBA ATP catabolic process
GO:0006298 IEA mismatch repair
GO:0007127 IMP meiosis I
GO:0007129 IMP synapsis
GO:0007131 IBA reciprocal meiotic recombination
GO:0007292 IMP female gamete generation
GO:0008094 IBA DNA-dependent ATPase activity
GO:0030983 IBA mismatched DNA binding
GO:0045143 IBA homologous chromosome segregation
GO:0051026 IBA chiasma assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077479 MSH5 mutS homolog 5 protein_coding Danio_rerio
ENSG00000204410 MSH5 mutS homolog 5 protein_coding Homo_sapiens
ENSG00000255152 MSH5-SAPCD1 MSH5-SAPCD1 readthrough (NMD candidate) protein_coding Homo_sapiens

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