C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM14A, SCD6 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000257103 LSM14A 9606 + 19:34172504-34229515 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000433627 LSM14A-003 34172568-34229288 protein_coding
  ENST00000540746 LSM14A-002 34172525-34228096 protein_coding
  ENST00000544216 LSM14A-001 34172566-34229515 protein_coding
  ENST00000585887 LSM14A-009 34219706-34221779 non_stop_decay
  ENST00000586157 LSM14A-004 34172658-34219877 protein_coding
  ENST00000588582 LSM14A-005 34208196-34229279 retained_intron
  ENST00000589878 LSM14A-006 34172504-34196666 nonsense_mediated_decay
  ENST00000590416 LSM14A-008 34221350-34227617 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000433627ENST00000540746ENST00000544216ENST00000585887ENST00000588582ENST00000589878
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000433627 9.136±0.00 16.464±0.00 1.225±0.00 9.721±0.00 6.087±1.93 6.353±0.00 7.222±0.00 8.544±6.88 4.793±0.00 4.267±2.06 17.321±0.00 14.136±7.36 12.508±1.48 7.988±0.26
ENST00000540746 19.813±0.00 9.196±0.00 1.370±0.00 5.681±4.16 9.257±0.00 17.198±0.00 4.938±0.00 7.947±0.00 2.716±0.38 4.532±3.12 7.459±0.00 15.195±1.57 9.347±0.74 18.681±0.04
ENST00000544216 N/A N/A N/A 2.339±0.00 N/A 1.259±0.00 N/A 2.992±2.13 3.061±0.00 2.703±0.00 1.823±0.00 11.489±6.64 8.308±1.51 7.946±0.00
ENST00000585887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 69.734±0.00 49.623±0.00 57.121±0.00
ENST00000588582 N/A N/A 0.829±0.00 N/A N/A 1.330±0.00 0.414±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000589878 N/A N/A N/A N/A 9.694±0.00 N/A N/A N/A N/A N/A 13.293±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003690 IEA double-stranded DNA binding
GO:0003725 IEA double-stranded RNA binding
GO:0003727 IEA single-stranded RNA binding
GO:0005737 IDA cytoplasm
GO:0006417 IEA regulation of translation
GO:0007275 IEA multicellular organismal development
GO:0010494 IDA cytoplasmic stress granule
GO:0033962 IDA cytoplasmic mRNA processing body assembly
GO:0039529 IEA RIG-I signaling pathway
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0051607 IEA defense response to virus
GO:0060340 IEA positive regulation of type I interferon-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006600 lsm14aa LSM14 homolog Aa (SCD6, S. cerevisiae) protein_coding Danio_rerio
ENSDARG00000011408 lsm14ab LSM14 homolog Ab (SCD6, S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000066568 Lsm14a LSM14 homolog A (SCD6, S. cerevisiae) protein_coding Mus_musculus

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