C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM14A, SCD6 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000544216 LSM14A-001 ENSG00000257103 9606 + 19:34172566-34229515 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000544216
Transcript ID Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000544216 2.339±0.00 1.259±0.00 2.992±2.13 3.061±0.00 2.703±0.00 1.823±0.00 11.489±6.64 8.308±1.51 7.946±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003690 IEA double-stranded DNA binding
GO:0003725 IEA double-stranded RNA binding
GO:0003727 IEA single-stranded RNA binding
GO:0005737 IDA cytoplasm
GO:0006417 IEA regulation of translation
GO:0007275 IEA multicellular organismal development
GO:0010494 IDA cytoplasmic stress granule
GO:0033962 IDA cytoplasmic mRNA processing body assembly
GO:0039529 IEA RIG-I signaling pathway
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0051607 IEA defense response to virus
GO:0060340 IEA positive regulation of type I interferon-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085585 Lsm14a-001 protein_coding Mus_musculus 0 1832
ENSMUST00000133046 Lsm14a-002 protein_coding Mus_musculus 0 540
ENSMUST00000155256 Lsm14a-003 protein_coding Mus_musculus 0 466
ENSMUST00000055485 Lsm14b-001 protein_coding Mus_musculus 0 209

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