C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM14 homolog A (SCD6, S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000066568 Lsm14a 10090 - 7:34344646-34389540 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000085585 Lsm14a-001 34344646-34389540 protein_coding
  ENSMUST00000133046 Lsm14a-002 34357451-34389080 protein_coding
  ENSMUST00000155256 Lsm14a-003 34353483-34375344 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085585ENSMUST00000133046ENSMUST00000155256
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085585 21.352±4.60 15.150±7.62 25.235±0.08 19.327±7.47 12.195±3.72 17.968±2.22 12.465±1.11 16.426±2.09 12.606±8.11 23.562±3.42 22.607±0.77 28.846±8.22 24.401±7.20 8.807±3.01
ENSMUST00000133046 N/A N/A N/A N/A 8.131±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155256 N/A N/A N/A 16.125±0.00 8.530±0.00 N/A N/A N/A N/A N/A N/A 41.827±0.00 47.466±10.95 9.701±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0003690 IDA double-stranded DNA binding
GO:0003725 IDA double-stranded RNA binding
GO:0003727 IDA single-stranded RNA binding
GO:0005737 ISS cytoplasm
GO:0006417 IEA regulation of translation
GO:0007275 IEA multicellular organismal development
GO:0010494 ISS cytoplasmic stress granule
GO:0033962 ISS cytoplasmic mRNA processing body assembly
GO:0039529 IGI RIG-I signaling pathway
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding
GO:0051607 IMP defense response to virus
GO:0060340 IDA positive regulation of type I interferon-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006600 lsm14aa LSM14 homolog Aa (SCD6, S. cerevisiae) protein_coding Danio_rerio
ENSDARG00000011408 lsm14ab LSM14 homolog Ab (SCD6, S. cerevisiae) protein_coding Danio_rerio
ENSG00000257103 LSM14A LSM14A, SCD6 homolog A (S. cerevisiae) protein_coding Homo_sapiens

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