C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000265681 RPL17 9606 - 18:49488453-49492565 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000418495 RPL17-201 49488488-49492565 protein_coding
  ENST00000578528 RPL17-010 49490841-49492430 protein_coding
  ENST00000578532 RPL17-017 49488561-49492432 protein_coding
  ENST00000578966 RPL17-011 49491050-49492485 retained_intron
  ENST00000579248 RPL17-018 49488484-49492444 protein_coding
  ENST00000579408 RPL17-003 49488484-49491840 protein_coding
  ENST00000579495 RPL17-004 49490864-49492450 retained_intron
  ENST00000580210 RPL17-015 49488518-49491814 protein_coding
  ENST00000580261 RPL17-001 49488484-49492523 protein_coding
  ENST00000580387 RPL17-019 49489477-49492433 protein_coding
  ENST00000581091 RPL17-012 49489361-49491586 processed_transcript
  ENST00000581305 RPL17-021 49491263-49492479 retained_intron
  ENST00000581373 RPL17-002 49488484-49492479 protein_coding
  ENST00000581741 RPL17-009 49489376-49490874 retained_intron
  ENST00000582588 RPL17-020 49489165-49490468 retained_intron
  ENST00000582782 RPL17-006 49490965-49492485 retained_intron
  ENST00000582935 RPL17-013 49490261-49490969 retained_intron
  ENST00000583036 RPL17-008 49489452-49492508 protein_coding
  ENST00000583637 RPL17-016 49488552-49492399 protein_coding
  ENST00000584364 RPL17-014 49488481-49490938 retained_intron
  ENST00000615479 RPL17-025 49490476-49492305 protein_coding
  ENST00000615760 RPL17-024 49489471-49492428 protein_coding
  ENST00000617346 RPL17-022 49489359-49492483 protein_coding
  ENST00000618613 RPL17-202 49488488-49492464 protein_coding
  ENST00000618619 RPL17-023 49488453-49492482 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000578528ENST00000579248ENST00000579408ENST00000580261ENST00000584364ENST00000618619
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000578528 N/A N/A N/A N/A N/A N/A 88.828±0.00 N/A N/A 382.719±0.00 N/A N/A N/A N/A
ENST00000579248 N/A N/A N/A N/A 76.354±0.00 N/A N/A 128.217±0.00 92.621±0.00 287.146±0.00 N/A N/A 91.464±3.89 99.117±0.00
ENST00000579408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 129.655±0.00 N/A N/A
ENST00000580261 194.132±0.00 325.926±0.00 36.827±0.00 79.900±2.55 149.931±18.24 326.802±139.65 40.706±3.08 89.093±31.22 177.661±0.00 120.621±0.00 61.927±3.04 650.873±585.80 248.052±30.33 176.831±0.00
ENST00000584364 N/A 172.951±0.00 N/A N/A N/A N/A N/A 34.913±0.00 N/A N/A 35.948±0.00 148.744±0.00 170.666±0.00 76.823±0.00
ENST00000618619 58.566±0.00 143.020±0.00 N/A N/A 54.372±0.00 176.204±0.00 N/A N/A N/A N/A N/A 37.324±0.00 N/A 68.474±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015934 IEA large ribosomal subunit
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057556 C21H18orf32 chromosome 18 open reading frame 32 protein_coding Danio_rerio
ENSMUSG00000090451 Gm6133 predicted gene 6133 protein_coding Mus_musculus

Loading